Basic information
Locus name	AT1G30810
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation(JUMONJI)
Effect for Senescence	unclear
Gene Description	transcription factor; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	cellular component nucleus molecular function protein binding
Sequence	AT1G30810.1 | Genomic | mRNA | CDS | Protein AT1G30810.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT1G30810.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -34.5 kcal/mol  p-value: 0.000627  position: 3874  target 5' G                  A  G  3'             UGACGGUGGUGAUGAGGA GA                 ACUGCUACUACUACUUCU CU      miRNA  3'                    A     5'
Ortholog Group
Ortholog Groups: OG5_127370	Accession Taxon NP_001031681 Arabidopsis thaliana NP_172338 Arabidopsis thaliana NP_174367 ( AT1G30810 ) Arabidopsis thaliana NP_181034 Arabidopsis thaliana NP_193773 Arabidopsis thaliana NP_564814 Arabidopsis thaliana CMT461C Cyanidioschyzon merolae strain 10D ACO61157 Micromonas sp. RCC299 ACO61743 Micromonas sp. RCC299 ACO64524 Micromonas sp. RCC299 NP_001054867 Oryza sativa Japonica Group NP_001055137 Oryza sativa Japonica Group 0800010110 Ostreococcus tauri 1300010225 Ostreococcus tauri fgenesh1_pg.C_Chr_03.0001000251 Ostreococcus tauri e_gw1.127.10.1 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_235000001 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_235000018 Physcomitrella patens subsp. patens 29611.m000235 Ricinus communis 29680.m001692 Ricinus communis 29776.m000471 Ricinus communis 30190.m011218 Ricinus communis fgenesh1_pg.C_chr_2000092 Thalassiosira pseudonana CCMP1335 XP_002948044 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10694 3.8E-264 7 753 No hit NA SMART SM00545 8.6E-22 58 99 IPR003349 Transcription factor jumonji, JmjN ProSiteProfiles PS51183 18.7 59 100 IPR003349 Transcription factor jumonji, JmjN Pfam PF02375 1.3E-15 60 93 IPR003349 Transcription factor jumonji, JmjN SUPERFAMILY SSF51197 9.1E-38 177 194 No hit NA SUPERFAMILY SSF51197 9.1E-38 228 454 No hit NA ProSiteProfiles PS51184 40.0 261 427 IPR003347 JmjC domain SMART SM00558 2.4E-69 261 427 IPR003347 JmjC domain Pfam PF02373 2.8E-45 294 410 IPR003347 JmjC domain Pfam PF02928 1.4E-16 519 572 IPR004198 Zinc finger, C5HC2-type ProSiteProfiles PS51542 22.9 644 702 IPR003888 FY-rich, N-terminal Pfam PF05964 2.8E-7 656 701 IPR003888 FY-rich, N-terminal SMART SM00541 1.3E-17 658 702 IPR003888 FY-rich, N-terminal ProSiteProfiles PS51543 24.6 704 788 IPR003889 FY-rich, C-terminal Pfam PF05965 6.8E-26 705 790 IPR003889 FY-rich, C-terminal SMART SM00542 1.2E-39 708 794 IPR003889 FY-rich, C-terminal