Basic information
Locus name	AT1G29940
Alias	NRPA2
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	NUCLEAR RNA POLYMERASE A2(NRPA2);Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process transcription, DNA-dependent molecular function DNA binding DNA-directed RNA polymerase activity ribonucleoside binding
Pathway	KEGG map00230 (EC 2.7.7.6) map00240 (EC 2.7.7.6) Reactome REACT_1788
Sequence	AT1G29940.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_127929	Accession Taxon NP_564341 ( AT1G29940 ) Arabidopsis thaliana CMS114C Cyanidioschyzon merolae strain 10D 113199 Chlamydomonas reinhardtii NP_113138 Guillardia theta ACO68415 Micromonas sp. RCC299 NP_001064952 Oryza sativa Japonica Group gw1.02.00.18.1 Ostreococcus tauri estExt_gwp_gw1.C_1690119 Physcomitrella patens subsp. patens 30040.m000275 Ricinus communis e_gw1.12.11.1 Thalassiosira pseudonana CCMP1335 XP_002955094 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR20856 0.0 10 1178 IPR015712 DNA-directed RNA polymerase, subunit 2 SUPERFAMILY SSF64484 4.9E-290 13 1172 No hit NA Pfam PF04563 3.2E-25 21 422 IPR007644 RNA polymerase, beta subunit, protrusion Pfam PF04561 1.7E-10 192 371 IPR007642 RNA polymerase Rpb2, domain 2 Pfam PF04565 1.6E-21 459 523 IPR007645 RNA polymerase Rpb2, domain 3 Pfam PF06883 6.4E-19 576 633 IPR009674 RNA polymerase I, Rpa2 specific Pfam PF00562 6.3E-108 686 1058 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 ProSitePatterns PS01166 NA 896 908 IPR007121 RNA polymerase, beta subunit, conserved site Pfam PF04560 1.3E-20 1060 1169 IPR007641 RNA polymerase Rpb2, domain 7
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787