Basic information   
Locus name AT1G17680
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryTranscription regulation
Effect for Senescenceunclear
Gene Descriptiontranscription factor-related
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology
molecular function
SequenceAT1G17680.1 | Genomic | mRNA | CDS | Protein
AT1G17680.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction      
Details
target: AT1G17680.1 
miRNA: ath-miR414
miRNA: ath-miR414
mfe: -32.8 kcal/mol 
p-value: 0.000887 

position: 490 
target 5' G                  A  U  3' 
           UGAUGAUGAUGAUGAGGG GA     
           ACUGCUACUACUACUUCU CU     
miRNA  3'                    A     5' 

target: AT1G17680.2 
miRNA: ath-miR414
miRNA: ath-miR414
mfe: -32.8 kcal/mol 
p-value: 0.000808 

position: 244 
target 5' G                  A  U  3' 
           UGAUGAUGAUGAUGAGGG GA     
           ACUGCUACUACUACUUCU CU     
miRNA  3'                    A     5' 
Ortholog Group      
Ortholog Groups: OG5_129092
AccessionTaxon
NP_173210Arabidopsis thaliana
NP_850945 ( AT1G17680 ) Arabidopsis thaliana
ACO66142Micromonas sp. RCC299
NP_001067667Oryza sativa Japonica Group
0400010364Ostreococcus tauri
estExt_gwp_gw1.C_80229Physcomitrella patens subsp. patens
30063.m001428Ricinus communis
XP_002949983Volvox carteri f. nagariensis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR230820.01896No hitNA
ProSiteProfilesPS5029316.2152498IPR013026Tetratricopeptide repeat-containing domain
SUPERFAMILYSSF484522.3E-16233328No hitNA
SMARTSM00028160.0255288IPR019734Tetratricopeptide repeat
SUPERFAMILYSSF484522.3E-16369486No hitNA
SMARTSM00028130.0398430IPR019734Tetratricopeptide repeat
PfamPF131810.4402426IPR019734Tetratricopeptide repeat
SMARTSM000282.7431464IPR019734Tetratricopeptide repeat
SUPERFAMILYSSF484526.3E-8609845No hitNA
ProSiteProfilesPS502938.0808841IPR013026Tetratricopeptide repeat-containing domain
SMARTSM0002812.0808841IPR019734Tetratricopeptide repeat