Basic information
Locus name	AT1G12610
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:AP2-EREBP
Effect for Senescence	Unclear
Gene Description	Upregulated in senescent leaves
Evidence	Molecular evidence:Real-Time PCR [Ref 1]
References	1: Balazadeh S, Ria_o-Pachon DM, Mueller-Roeber B Transcription factors regulating leaf senescence in Arabidopsis thaliana. Plant Biol (Stuttg) 2008 Sep;10 Suppl 1:63-75
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function sequence-specific DNA binding transcription factor activity
Sequence	AT1G12610.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT1G12610.1  miRNA: ath-miR396a miRNA: ath-miR396a mfe: -25.2 kcal/mol  p-value: 0.009722  position:  497  target 5' G    G   C        C    A 3'             AGUU CGG GGAAGCUG GGAG              UCAA GUU CUUUCGAC CCUU   miRNA  3' G                 A      5'  target: AT1G12610.1  miRNA: ath-miR396b miRNA: ath-miR396b mfe: -25.7 kcal/mol  p-value: 0.008422  position:  496  target 5' A     G   C        C    A 3'             GAGUU CGG GGAAGCUG GGAG              UUCAA GUU CUUUCGAC CCUU   miRNA  3'                    A      5'
Ortholog Group
Ortholog Groups: OG5_143059	Accession Taxon NP_001077764 Arabidopsis thaliana NP_172721 ( AT1G12610 ) Arabidopsis thaliana NP_176491 Arabidopsis thaliana NP_200012 Arabidopsis thaliana NP_567719 Arabidopsis thaliana NP_567720 Arabidopsis thaliana NP_567721 Arabidopsis thaliana NP_001047727 Oryza sativa Japonica Group NP_001053608 Oryza sativa Japonica Group NP_001056661 Oryza sativa Japonica Group 30147.m014313 Ricinus communis 30190.m011119 Ricinus communis 30190.m011120 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31839 8.3E-97 1 207 No hit NA Pfam PF00847 4.5E-12 28 78 IPR001471 AP2/ERF domain ProSiteProfiles PS51032 21.6 29 86 IPR001471 AP2/ERF domain SMART SM00380 6.5E-23 29 92 IPR001471 AP2/ERF domain SUPERFAMILY SSF54171 3.7E-19 29 88 IPR016177 DNA-binding, integrase-type PRINTS PR00367 3.3E-7 30 41 IPR001471 AP2/ERF domain PRINTS PR00367 3.3E-7 52 68 IPR001471 AP2/ERF domain
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787