Leaf Senescence DataBase

Basic information

Locus name

AT1G14420

Alias

AT59

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Others

Effect for Senescence

unclear

Gene Description

AT59; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

molecular function

Pathway

KEGG

Sequence

AT1G14420.1 | Genomic | mRNA | CDS | Protein

Ortholog Group

Ortholog Groups: OG5_160112

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04431	1.1E-22	30	85	IPR007524	Pectate lyase, N-terminal
PANTHER	PTHR31683	1.7E-198	34	459	No hit	NA
SUPERFAMILY	SSF51126	1.6E-96	105	450	IPR011050	Pectin lyase fold/virulence factor
PRINTS	PR00807	6.3E-84	127	144	IPR018082	AmbAllergen
PRINTS	PR00807	6.3E-84	151	176	IPR018082	AmbAllergen
SMART	SM00656	9.4E-97	179	376	IPR002022	Pectate lyase/Amb allergen
Pfam	PF00544	4.8E-59	185	370	IPR002022	Pectate lyase/Amb allergen
PRINTS	PR00807	6.3E-84	187	203	IPR018082	AmbAllergen
PRINTS	PR00807	6.3E-84	251	272	IPR018082	AmbAllergen
PRINTS	PR00807	6.3E-84	331	350	IPR018082	AmbAllergen
PRINTS	PR00807	6.3E-84	353	372	IPR018082	AmbAllergen
PRINTS	PR00807	6.3E-84	395	419	IPR018082	AmbAllergen
PRINTS	PR00807	6.3E-84	430	453	IPR018082	AmbAllergen