Basic information
Locus name	AT1G21160
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Protein biosynthesis
Effect for Senescence	unclear
Gene Description	GTP binding / GTPase/ translation initiation factor
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function GTP binding GTPase activity
Sequence	AT1G21160.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT1G21160.1  miRNA: ath-miR397a miRNA: ath-miR397a mfe: -31.4 kcal/mol  p-value: 0.006761  position: 2500  target 5' G       G       C    A  3'             GUCAACG UGUACUC GUGA                 UAGUUGC ACGUGAG UACU      miRNA  3' G       G       U       5'  target: AT1G21160.1  miRNA: ath-miR397b miRNA: ath-miR397b mfe: -33.3 kcal/mol  p-value: 0.001300  position: 2500  target 5' G               C    A  3'             GUCAACGGUGUACUC GUGA                 UAGUUGCUACGUGAG UACU      miRNA  3' G               U       5'
Ortholog Group
Ortholog Groups: OG5_127312	Accession Taxon NP_001118399 Arabidopsis thaliana NP_173540 ( AT1G21160 ) Arabidopsis thaliana NP_177798 Arabidopsis thaliana NP_177807 Arabidopsis thaliana NP_180338 Arabidopsis thaliana NP_565140 Arabidopsis thaliana CML150C Cyanidioschyzon merolae strain 10D 141272 Chlamydomonas reinhardtii ACO68578 Micromonas sp. RCC299 NP_001056497 Oryza sativa Japonica Group e_gw1.03.00.98.1 Ostreococcus tauri e_gw1.247.8.1 Physcomitrella patens subsp. patens 29701.m000590 Ricinus communis fgenesh1_pm.C_chr_2000043 Thalassiosira pseudonana CCMP1335 XP_002954887 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23115 1.0E-298 222 1091 No hit NA Coils Coil NA 233 274 No hit NA SUPERFAMILY SSF52540 2.4E-62 489 783 IPR027417 P-loop containing nucleoside triphosphate hydrolase Pfam PF00009 4.0E-34 498 707 IPR000795 Elongation factor, GTP-binding domain PRINTS PR00315 1.8E-7 499 512 IPR000795 Elongation factor, GTP-binding domain TIGRFAM TIGR00231 2.3E-16 500 624 IPR005225 Small GTP-binding protein domain PRINTS PR00315 1.8E-7 563 573 IPR000795 Elongation factor, GTP-binding domain PRINTS PR00315 1.8E-7 579 590 IPR000795 Elongation factor, GTP-binding domain PRINTS PR00315 1.8E-7 615 624 IPR000795 Elongation factor, GTP-binding domain Pfam PF03144 3.8E-10 734 811 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 Coils Coil NA 817 838 No hit NA SUPERFAMILY SSF52156 4.8E-33 820 950 IPR023115 Translation initiation factor IF- 2, domain 3 Pfam PF11987 3.7E-19 830 936 IPR023115 Translation initiation factor IF- 2, domain 3 SUPERFAMILY SSF50447 1.7E-23 954 1091 IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel