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Locus name | AT2G31070 |
Alias | TCP10 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Transcription regulation:JA biosynthesis |
Effect for Senescence | promote |
Gene Description | Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. |
Evidence | Genetic evidence:Mutant [Ref 1] |
References | 1: Schommer C, Palatnik JF, Aggarwal P, Chetelat A, Cubas P, Farmer EE, Nath U, Weigel DControl of jasmonate biosynthesis and senescence by miR319 targets.PLoS Biol. 2008 Sep 23;6(9):e230 |
Sequence | AT2G31070.1 | Genomic | mRNA | CDS | Protein
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Mutant name |
tcp2tcp4tcp10 |
Mutant/Transgenic |
mutant |
Ecotype |
Col-0 |
Mutagenesis type |
T-DNA insertion_knock out |
miRNA Interaction | |
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Details | | target: AT2G31070.1 miRNA: ath-miR159a miRNA: ath-miR159a mfe: -33.4 kcal/mol p-value: 0.002005
position: 1381 target 5' A A U 3' GGGGU CCCUUCAGUCCAG UCUCG GGGAAGUUAGGUU miRNA 3' A A U 5'
target: AT2G31070.1 miRNA: ath-miR159b miRNA: ath-miR159b mfe: -33.3 kcal/mol p-value: 0.001910
position: 1380 target 5' A A U 3' AGGGGU CCCUUCAGUCCAG UUCUCG GGGAAGUUAGGUU miRNA 3' A U 5'
target: AT2G31070.1 miRNA: ath-miR159c miRNA: ath-miR159c mfe: -36.0 kcal/mol p-value: 0.000628
position: 1380 target 5' A A U 3' AGGGGU CCCUUCAGUCCAG UCCUCG GGGAAGUUAGGUU miRNA 3' A U 5'
target: AT2G31070.1 miRNA: ath-miR319a miRNA: ath-miR319a mfe: -37.3 kcal/mol p-value: 0.000586
position: 1380 target 5' A A U 3' AGGG GU CCCUUCAGUCCAG UCCC CG GGGAAGUCAGGUU miRNA 3' U A 5'
target: AT2G31070.1 miRNA: ath-miR319b miRNA: ath-miR319b mfe: -37.3 kcal/mol p-value: 0.001446
position: 1380 target 5' A A U 3' AGGG GU CCCUUCAGUCCAG UCCC CG GGGAAGUCAGGUU miRNA 3' U A 5'
target: AT2G31070.1 miRNA: ath-miR319c miRNA: ath-miR319c mfe: -39.0 kcal/mol p-value: 0.000284
position: 1379 target 5' A A U 3' AAGGGGU CCCUUCAGUCCAG UUCCUCG GGGAAGUCAGGUU miRNA 3' A 5'
target: AT2G31070.1 miRNA: ath-miR826 miRNA: ath-miR826 mfe: -25.0 kcal/mol p-value: 0.058411
position: 711 target 5' C A G G 3' UACG UGU CAAGACCGG UUA GUGC AUA GUUUUGGCC GAU miRNA 3' G U 5'
target: AT2G31070.1 miRNA: ath-miR847 miRNA: ath-miR847 mfe: -27.6 kcal/mol p-value: 0.013446
position: 560 target 5' G G G A U 3' CGUC GAGAA GAGGAGGAG GA GUAG UUCUU CUUCUCCUC CU miRNA 3' A 5'
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Cross Link | |
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Localization | nucleus |
Evidence | SUBAcon |
Pubmed ID | 23180787 |