Basic information
Locus name	AT1G20696
Alias	HMGB3
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	HIGH MOBILITY GROUP B 3 (HMGB3); FUNCTIONS IN: chromatin binding, transcription factor activity, structural constituent of chromatin, DNA binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Sequence	AT1G20696.1 | Genomic | mRNA | CDS | Protein AT1G20696.2 | Genomic | mRNA | CDS | Protein AT1G20696.3 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126740	Accession Taxon NP_001031074 Arabidopsis thaliana NP_001031075 ( AT1G20696 ) Arabidopsis thaliana NP_001077569 Arabidopsis thaliana NP_001077570 Arabidopsis thaliana NP_001078269 Arabidopsis thaliana NP_190756 Arabidopsis thaliana NP_564123 Arabidopsis thaliana NP_564124 Arabidopsis thaliana NP_974413 Arabidopsis thaliana 142283 Chlamydomonas reinhardtii 151215 Chlamydomonas reinhardtii 192899 Chlamydomonas reinhardtii ACO61991 Micromonas sp. RCC299 ACO61992 Micromonas sp. RCC299 ACO64826 Micromonas sp. RCC299 NP_001058640 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_Chr_15.00010198 Ostreococcus tauri gw1.17.00.287.1 Ostreococcus tauri e_gw1.34.410.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_880025 Physcomitrella patens subsp. patens gw1.106.59.1 Physcomitrella patens subsp. patens gw1.106.60.1 Physcomitrella patens subsp. patens 29669.m000844 Ricinus communis 29701.m000600 Ricinus communis e_gw1.11a.185.1 Thalassiosira pseudonana CCMP1335 e_gw1.12.237.1 Thalassiosira pseudonana CCMP1335 e_gw1.2.827.1 Thalassiosira pseudonana CCMP1335 XP_002945803 Volvox carteri f. nagariensis XP_002957151 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR13711 1.9E-33 28 136 No hit NA SUPERFAMILY SSF47095 2.1E-25 28 109 IPR009071 High mobility group (HMG) box domain SMART SM00398 1.5E-27 34 105 IPR009071 High mobility group (HMG) box domain Pfam PF00505 1.3E-25 35 104 IPR009071 High mobility group (HMG) box domain ProSiteProfiles PS50118 20.1 35 104 IPR009071 High mobility group (HMG) box domain Coils Coil NA 86 107 No hit NA