Basic information
Locus name	AT5G65210
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	GA1; FUNCTIONS IN: transcription factor activity, calmodulin binding, DNA binding; INVOLVED IN: defense response to bacterium
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function sequence-specific DNA binding transcription factor activity sequence-specific DNA binding
Sequence	AT5G65210.1 | Genomic | mRNA | CDS | Protein AT5G65210.2 | Genomic | mRNA | CDS | Protein AT5G65210.3 | Genomic | mRNA | CDS | Protein AT5G65210.4 | Genomic | mRNA | CDS | Protein AT5G65210.5 | Genomic | mRNA | CDS | Protein AT5G65210.6 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT5G65210.2  miRNA: ath-miR157a miRNA: ath-miR157a mfe: -24.8 kcal/mol  p-value: 0.012557  position:  459  target 5' U              A     G 3'             UGUUCUUUGUUUUC GUUGA              ACGAGAGAUAGAAG CAGUU   miRNA  3' C              A       5'  target: AT5G65210.2  miRNA: ath-miR157b miRNA: ath-miR157b mfe: -24.8 kcal/mol  p-value: 0.012463  position:  459  target 5' U              A     G 3'             UGUUCUUUGUUUUC GUUGA              ACGAGAGAUAGAAG CAGUU   miRNA  3' C              A       5'  target: AT5G65210.2  miRNA: ath-miR157c miRNA: ath-miR157c mfe: -24.8 kcal/mol  p-value: 0.012497  position:  459  target 5' U              A     G 3'             UGUUCUUUGUUUUC GUUGA              ACGAGAGAUAGAAG CAGUU   miRNA  3' C              A       5'
Ortholog Group
Ortholog Groups: OG5_160017	Accession Taxon NP_001032147 Arabidopsis thaliana NP_001032148 ( AT5G65210 ) Arabidopsis thaliana NP_001032149 Arabidopsis thaliana NP_001078800 Arabidopsis thaliana NP_196565 Arabidopsis thaliana NP_201324 Arabidopsis thaliana NP_851273 Arabidopsis thaliana
Cross Link
Database Entry ID E-value Start End InterPro ID Description SMART SM00338 2.1E-6 10 73 IPR004827 Basic-leucine zipper domain Pfam PF00170 4.8E-9 12 48 IPR004827 Basic-leucine zipper domain ProSiteProfiles PS50217 8.8 12 54 IPR004827 Basic-leucine zipper domain PANTHER PTHR22952 4.5E-215 13 296 No hit NA SUPERFAMILY SSF57959 1.9E-7 14 50 No hit NA ProSitePatterns PS00036 NA 17 32 IPR004827 Basic-leucine zipper domain Coils Coil NA 33 61 No hit NA Pfam PF14144 8.1E-31 99 176 IPR025422 DOG1 domain
Mutant Image
normal leaf senescence
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787