Leaf Senescence DataBase

Basic information

Locus name

AT1G13195

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Transcription regulation

Effect for Senescence

unclear

Gene Description

zinc finger (C3HC4-type RING finger) family protein. Gene expression is increased during leaf senescence.

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

molecular function

Sequence

miRNA Interaction

Details

target: AT1G13195.1
miRNA: ath-miR860
miRNA: ath-miR860
mfe: -26.9 kcal/mol
p-value: 0.001908

position: 499
target 5' C    A           A   A  3'
           UACA GGUCCAGUCUG UGG
           AUGU UCAGGUUAGAU ACU
miRNA  3' U    A           A      5'

target: AT1G13195.2
miRNA: ath-miR860
miRNA: ath-miR860
mfe: -26.9 kcal/mol
p-value: 0.002638

position: 829
target 5' C    A           A   A  3'
           UACA GGUCCAGUCUG UGG
           AUGU UCAGGUUAGAU ACU
miRNA  3' U    A           A      5'

Ortholog Group

Ortholog Groups: OG5_211695

Accession	Taxon
NP_001117278	Arabidopsis thaliana
NP_563922 ( AT1G13195 )	Arabidopsis thaliana

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR12109	2.4E-82	1	215	No hit	NA
SUPERFAMILY	SSF57850	1.7E-12	117	166	No hit	NA
Pfam	PF13923	4.9E-7	121	162	No hit	NA
ProSiteProfiles	PS50089	11.6	124	162	IPR001841	Zinc finger, RING-type
SMART	SM00184	7.1E-4	124	161	IPR001841	Zinc finger, RING-type
ProSitePatterns	PS00518	NA	139	148	IPR017907	Zinc finger, RING-type, conserved site