Leaf Senescence DataBase

Basic information

Locus name

AT1G08970

Alias

NF-YC9

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Transcription regulation

Effect for Senescence

unclear

Gene Description

NUCLEAR FACTOR Y, SUBUNIT C9 (NF-YC9); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent. Gene expression is increased during leaf senescence.

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

cellular component	intracellular
molecular function	protein heterodimerization activity sequence-specific DNA binding

Sequence

Ortholog Group

Ortholog Groups: OG5_152404

Accession	Taxon
NP_172371	Arabidopsis thaliana
NP_175880	Arabidopsis thaliana
NP_849619 ( AT1G08970 )	Arabidopsis thaliana
NP_849808	Arabidopsis thaliana
NP_973796	Arabidopsis thaliana
NP_973797	Arabidopsis thaliana
NP_974030	Arabidopsis thaliana
29844.m003332	Ricinus communis
30128.m008750	Ricinus communis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR10252	2.3E-82	44	222	No hit	NA
SUPERFAMILY	SSF47113	1.7E-32	48	152	IPR009072	Histone-fold
Pfam	PF00808	2.3E-22	80	143	IPR003958	Transcription factor CBF/NF-Y/archaeal histone

Mutant Image

ny-yc9(SALK_134000C) exhibited normal leaf senescence.

Subcellular Localization

Localization 1
	Localization	nucleus
	Evidence	Localization with GFP-fusion protein (GFP:cDNA)
	Pubmed ID	10737809

Localization 2
	Localization	cytoplasm and nucleus
	Evidence	Localization with GFP-ORF fusion protein (GFP:cDNA)
	Pubmed ID	15610358

Localization 3
	Localization	nucleus
	Evidence	SUBAcon
	Pubmed ID	23180787