Basic information
Locus name	AT1G55020
Alias	LOX1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Hormone response pathway:JA
Effect for Senescence	promote
Gene Description	Expression is greatly increased in leaves during leaf senescence
Evidence	Molecular evidence:Northern [Ref 1]
References	1: He Y, Fukushige H, Hildebrand DF, Gan S Evidence supporting a role of jasmonic acid in Arabidopsis leaf senescence. Plant Physiol. 2002 Mar;128(3):876-84
Gene Ontology	biological process oxidation-reduction process molecular function metal ion binding oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Pathway	KEGG map00591 (EC 1.13.11.12) map00592 (EC 1.13.11.12) MetaCyc PWY-5410
Sequence	AT1G55020.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT1G55020.1  miRNA: ath-miR831 miRNA: ath-miR831 mfe: -27.1 kcal/mol  p-value: 0.016427  position:  2101  target 5' A      U C      A      U 3'             AGGAGG G GCGAGG AGGUCA              UUCUUC C UGCUUC UCUAGU   miRNA  3' G      U A               5'
Ortholog Group
Ortholog Groups: OG5_127482	Accession Taxon NP_175900 ( AT1G55020 ) Arabidopsis thaliana NP_176923 Arabidopsis thaliana NP_177396 Arabidopsis thaliana NP_188879 Arabidopsis thaliana NP_564021 Arabidopsis thaliana NP_566875 Arabidopsis thaliana 144677 Chlamydomonas reinhardtii NP_001046180 Oryza sativa Japonica Group NP_001049158 Oryza sativa Japonica Group NP_001050990 Oryza sativa Japonica Group NP_001050993 Oryza sativa Japonica Group NP_001050995 Oryza sativa Japonica Group NP_001051212 Oryza sativa Japonica Group NP_001052913 Oryza sativa Japonica Group NP_001055143 Oryza sativa Japonica Group NP_001062199 Oryza sativa Japonica Group NP_001062200 Oryza sativa Japonica Group NP_001067011 Oryza sativa Japonica Group NP_001067015 Oryza sativa Japonica Group NP_001068135 Oryza sativa Japonica Group e_gw1.171.1.1 Physcomitrella patens subsp. patens e_gw1.21.1.1 Physcomitrella patens subsp. patens e_gw1.434.22.1 Physcomitrella patens subsp. patens e_gw1.97.30.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_4190013 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_4190004 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2320058 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_4190009 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_4190017 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_700115 Physcomitrella patens subsp. patens 29468.m000030 Ricinus communis 29680.m001710 Ricinus communis 29726.m003891 Ricinus communis 29808.m000898 Ricinus communis 29851.m002422 Ricinus communis 29851.m002424 Ricinus communis 29929.m004699 Ricinus communis 30128.m008781 Ricinus communis 30152.m002449 Ricinus communis 30169.m006387 Ricinus communis 30169.m006389 Ricinus communis 30178.m000859 Ricinus communis XP_002952279 Volvox carteri f. nagariensis XP_002952280 Volvox carteri f. nagariensis XP_002956550 Volvox carteri f. nagariensis XP_002956551 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SMART SM00308 7.6E-67 19 162 IPR001024 Lipoxygenase, LH2 SUPERFAMILY SSF49723 2.7E-55 19 165 IPR008976 Lipase/lipooxygenase, PLAT/LH2 ProSiteProfiles PS50095 22.0 21 161 IPR001024 Lipoxygenase, LH2 PANTHER PTHR11771 0.0 33 859 IPR000907 Lipoxygenase Pfam PF01477 1.3E-17 68 160 IPR001024 Lipoxygenase, LH2 PRINTS PR00468 2.7E-92 131 149 IPR001246 Lipoxygenase, plant PRINTS PR00468 2.7E-92 157 178 IPR001246 Lipoxygenase, plant ProSiteProfiles PS51393 317.6 164 859 IPR013819 Lipoxygenase, C-terminal SUPERFAMILY SSF48484 3.3E-280 166 859 IPR013819 Lipoxygenase, C-terminal Pfam PF00305 0.0 171 843 IPR013819 Lipoxygenase, C-terminal PRINTS PR00468 2.7E-92 196 212 IPR001246 Lipoxygenase, plant PRINTS PR00468 2.7E-92 226 245 IPR001246 Lipoxygenase, plant PRINTS PR00468 2.7E-92 296 317 IPR001246 Lipoxygenase, plant PRINTS PR00468 2.7E-92 345 361 IPR001246 Lipoxygenase, plant PRINTS PR00468 2.7E-92 384 403 IPR001246 Lipoxygenase, plant PRINTS PR00468 2.7E-92 450 474 IPR001246 Lipoxygenase, plant PRINTS PR00087 1.3E-21 496 513 IPR013819 Lipoxygenase, C-terminal PRINTS PR00087 1.3E-21 514 531 IPR013819 Lipoxygenase, C-terminal ProSitePatterns PS00711 NA 514 528 IPR020833 Lipoxygenase, iron binding site PRINTS PR00087 1.3E-21 534 554 IPR013819 Lipoxygenase, C-terminal ProSitePatterns PS00081 NA 541 551 IPR020834 Lipoxygenase, conserved site PRINTS PR00468 2.7E-92 772 786 IPR001246 Lipoxygenase, plant
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787