Basic information
Locus name	AT1G08460
Alias	HDA08
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	HDA08; FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation. Gene expression is increased during leaf senescence.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Sequence	AT1G08460.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126654	Accession Taxon NP_200914 Arabidopsis thaliana NP_200915 Arabidopsis thaliana NP_563817 ( AT1G08460 ) Arabidopsis thaliana NP_566612 Arabidopsis thaliana NP_567921 Arabidopsis thaliana NP_850609 Arabidopsis thaliana CMG132C Cyanidioschyzon merolae strain 10D 104855 Chlamydomonas reinhardtii 118908 Chlamydomonas reinhardtii 141603 Chlamydomonas reinhardtii 177316 Chlamydomonas reinhardtii ACO62853 Micromonas sp. RCC299 ACO67233 Micromonas sp. RCC299 NP_001055667 Oryza sativa Japonica Group NP_001058957 Oryza sativa Japonica Group NP_001060205 Oryza sativa Japonica Group NP_001066322 Oryza sativa Japonica Group e_gw1.09.00.283.1 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_07.00010063 Ostreococcus tauri e_gw1.145.28.1 Physcomitrella patens subsp. patens e_gw1.312.11.1 Physcomitrella patens subsp. patens e_gw1.85.49.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1420032 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_34000141 Physcomitrella patens subsp. patens 29992.m001409 Ricinus communis 30055.m001629 Ricinus communis 30138.m003978 Ricinus communis 30174.m008716 Ricinus communis fgenesh1_pg.C_chr_3000169 Thalassiosira pseudonana CCMP1335 gw1.1.415.1 Thalassiosira pseudonana CCMP1335 XP_002947645 Volvox carteri f. nagariensis XP_002954072 Volvox carteri f. nagariensis XP_002956564 Volvox carteri f. nagariensis XP_002958328 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10625 1.3E-261 1 375 IPR000286 Histone deacetylase superfamily SUPERFAMILY SSF52768 7.7E-94 3 374 No hit NA Pfam PF00850 3.1E-78 36 334 IPR023801 Histone deacetylase domain PRINTS PR01270 3.4E-14 141 164 IPR000286 Histone deacetylase superfamily PRINTS PR01270 3.4E-14 175 190 IPR000286 Histone deacetylase superfamily PRINTS PR01270 3.4E-14 264 274 IPR000286 Histone deacetylase superfamily
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787