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Locus name | AT3G62770 |
Alias | ATATG18A |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Nutrient recycling:Autophagy |
Effect for Senescence | delay |
Gene Description | Required for autophagosome formation during nutrient deprivation and senescence. |
Evidence | Genetic evidence:Mutant [Ref 1] |
References | 1: Xiong Y, Contento AL, Bassham DCAtATG18a is required for the formation of autophagosomes during nutrient stress and senescence in Arabidopsis thaliana.Plant J. 2005 May;42(4):535-46 |
Gene Ontology | |
Sequence | AT3G62770.1 | Genomic | mRNA | CDS | Protein AT3G62770.3 | Genomic | mRNA | CDS | Protein
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Mutant name |
AtATG18a RNAi plant |
Mutant/Transgenic |
transgenic |
Ecotype |
Col-0 |
Mutagenesis type |
RNAi |
miRNA Interaction | |
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Details | | target: AT3G62770.1 miRNA: ath-miR2938 miRNA: ath-miR2938 mfe: -24.9 kcal/mol p-value: 0.042648
position: 428 target 5' U C U C U 3' UG GA CCCUUUCG GAGAUU AC CU GGGAGAGU UUCUAG miRNA 3' G U U 5'
target: AT3G62770.1 miRNA: ath-miR830 miRNA: ath-miR830 mfe: -20.5 kcal/mol p-value: 0.017375
position: 752 target 5' U G G 3' GCU UUUCUCAGGGU GUUG UGA GAAGAGUUUUA CAAU miRNA 3' G A U 5'
target: AT3G62770.1 miRNA: ath-miR831 miRNA: ath-miR831 mfe: -27.9 kcal/mol p-value: 0.006894
position: 983 target 5' A U G G 3' AGGAGGGGUGCGGA AGA CA UUCUUCUCAUGCUU UCU GU miRNA 3' G C A 5'
target: AT3G62770.1 miRNA: ath-miR854a miRNA: ath-miR854a mfe: -28.3 kcal/mol p-value: 0.018277
position: 1157 target 5' A G G C 3' UC UC UCUCUGUCUUUAUU AG AG AGGGAUAGGAGUAG miRNA 3' G G G 5'
target: AT3G62770.1 miRNA: ath-miR854b miRNA: ath-miR854b mfe: -28.3 kcal/mol p-value: 0.019168
position: 1157 target 5' A G G C 3' UC UC UCUCUGUCUUUAUU AG AG AGGGAUAGGAGUAG miRNA 3' G G G 5'
target: AT3G62770.1 miRNA: ath-miR854c miRNA: ath-miR854c mfe: -28.3 kcal/mol p-value: 0.017917
position: 1157 target 5' A G G C 3' UC UC UCUCUGUCUUUAUU AG AG AGGGAUAGGAGUAG miRNA 3' G G G 5'
target: AT3G62770.1 miRNA: ath-miR854d miRNA: ath-miR854d mfe: -28.3 kcal/mol p-value: 0.019610
position: 1157 target 5' A G G C 3' UC UC UCUCUGUCUUUAUU AG AG AGGGAUAGGAGUAG miRNA 3' G G G 5'
target: AT3G62770.1 miRNA: ath-miR854e miRNA: ath-miR854e mfe: -28.3 kcal/mol p-value: 0.019984
position: 1157 target 5' A G G C 3' UC UC UCUCUGUCUUUAUU AG AG AGGGAUAGGAGUAG miRNA 3' G G G 5'
target: AT3G62770.3 miRNA: ath-miR2938 miRNA: ath-miR2938 mfe: -24.9 kcal/mol p-value: 0.045698
position: 428 target 5' U C U C U 3' UG GA CCCUUUCG GAGAUU AC CU GGGAGAGU UUCUAG miRNA 3' G U U 5'
target: AT3G62770.3 miRNA: ath-miR830 miRNA: ath-miR830 mfe: -20.5 kcal/mol p-value: 0.018392
position: 752 target 5' U G G 3' GCU UUUCUCAGGGU GUUG UGA GAAGAGUUUUA CAAU miRNA 3' G A U 5'
target: AT3G62770.3 miRNA: ath-miR831 miRNA: ath-miR831 mfe: -27.9 kcal/mol p-value: 0.007562
position: 983 target 5' A U G G 3' AGGAGGGGUGCGGA AGA CA UUCUUCUCAUGCUU UCU GU miRNA 3' G C A 5'
target: AT3G62770.3 miRNA: ath-miR854a miRNA: ath-miR854a mfe: -28.3 kcal/mol p-value: 0.020274
position: 1157 target 5' A G G C 3' UC UC UCUCUGUCUUUAUU AG AG AGGGAUAGGAGUAG miRNA 3' G G G 5'
target: AT3G62770.3 miRNA: ath-miR854b miRNA: ath-miR854b mfe: -28.3 kcal/mol p-value: 0.020941
position: 1157 target 5' A G G C 3' UC UC UCUCUGUCUUUAUU AG AG AGGGAUAGGAGUAG miRNA 3' G G G 5'
target: AT3G62770.3 miRNA: ath-miR854c miRNA: ath-miR854c mfe: -28.3 kcal/mol p-value: 0.019818
position: 1157 target 5' A G G C 3' UC UC UCUCUGUCUUUAUU AG AG AGGGAUAGGAGUAG miRNA 3' G G G 5'
target: AT3G62770.3 miRNA: ath-miR854d miRNA: ath-miR854d mfe: -28.3 kcal/mol p-value: 0.021819
position: 1157 target 5' A G G C 3' UC UC UCUCUGUCUUUAUU AG AG AGGGAUAGGAGUAG miRNA 3' G G G 5'
target: AT3G62770.3 miRNA: ath-miR854e miRNA: ath-miR854e mfe: -28.3 kcal/mol p-value: 0.021881
position: 1157 target 5' A G G C 3' UC UC UCUCUGUCUUUAUU AG AG AGGGAUAGGAGUAG miRNA 3' G G G 5'
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Ortholog Group | |
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Ortholog Groups: OG5_128185 | |
Cross Link | |
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Mutant Image | |
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Different from previous report, we found that atg18a (SALK_111282C) mutant exhibited normal or slightly delayed senescence phenotype compared with wild type Col-0 (7-week-old). | |
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