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About
Basic information
Locus name
AT4G05160
Alias
C17L7.80
Organism
Arabidopsis thaliana
Taxonomic identifier
[NCBI]
Function category
Lipid/Carbohydrate metabolism
Effect for Senescence
unclear
Gene Description
Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA.
Evidence
Molecular evidence:Blast search [Ref 1]
References
1: Snowden KC, Simkin AJ, Janssen BJ, Templeton KR, Loucas HM, Simons JL, Karunairetnam S, Gleave AP, Clark DG, Klee HJ
The Decreased apical dominance1/Petunia hybrida CAROTENOID CLEAVAGE DIOXYGENASE8 gene affects branch production and plays a role in leaf senescence, root growth, and flower development.
Plant Cell 2005 Mar;17(3):746-59
Gene Ontology
biological process
metabolic process
molecular function
catalytic activity
Sequence
AT4G05160.1 |
Genomic
|
mRNA
|
CDS
|
Protein
Ortholog Group
Ortholog Groups:
OG5_126609
Accession
Taxon
NP_001077697
Arabidopsis thaliana
NP_173472
Arabidopsis thaliana
NP_173473
Arabidopsis thaliana
NP_173474
Arabidopsis thaliana
NP_174340
Arabidopsis thaliana
NP_175579
Arabidopsis thaliana
NP_176686
Arabidopsis thaliana
NP_188760
Arabidopsis thaliana
NP_188761
Arabidopsis thaliana
NP_190468
Arabidopsis thaliana
NP_192425
( AT4G05160 )
Arabidopsis thaliana
NP_198628
Arabidopsis thaliana
NP_564115
Arabidopsis thaliana
NP_849793
Arabidopsis thaliana
NP_849844
Arabidopsis thaliana
NP_973872
Arabidopsis thaliana
146546
Chlamydomonas reinhardtii
ACO68802
Micromonas sp. RCC299
NP_001046069
Oryza sativa Japonica Group
NP_001047819
Oryza sativa Japonica Group
NP_001048867
Oryza sativa Japonica Group
NP_001048992
Oryza sativa Japonica Group
NP_001054304
Oryza sativa Japonica Group
NP_001058252
Oryza sativa Japonica Group
NP_001060922
Oryza sativa Japonica Group
NP_001061353
Oryza sativa Japonica Group
NP_001061935
Oryza sativa Japonica Group
e_gw1.02.00.157.1
Ostreococcus tauri
gw1.04.00.473.1
Ostreococcus tauri
e_gw1.12.278.1
Physcomitrella patens subsp. patens
e_gw1.167.67.1
Physcomitrella patens subsp. patens
e_gw1.18.145.1
Physcomitrella patens subsp. patens
e_gw1.38.65.1
Physcomitrella patens subsp. patens
e_gw1.51.32.1
Physcomitrella patens subsp. patens
e_gw1.6.71.1
Physcomitrella patens subsp. patens
estExt_Genewise1.C_520075
Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_200030
Physcomitrella patens subsp. patens
estExt_fgenesh2_pg.C_710053
Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_185000045
Physcomitrella patens subsp. patens
28429.m000109
Ricinus communis
28872.m000246
Ricinus communis
29589.m001235
Ricinus communis
29929.m004700
Ricinus communis
29953.m000429
Ricinus communis
30073.m002251
Ricinus communis
30078.m002285
Ricinus communis
30131.m006921
Ricinus communis
30147.m013735
Ricinus communis
30170.m014327
Ricinus communis
30190.m010972
Ricinus communis
30190.m011196
Ricinus communis
fgenesh1_pg.C_chr_3000719
Thalassiosira pseudonana CCMP1335
thaps1_ua_kg.chr_4000293
Thalassiosira pseudonana CCMP1335
XP_002948013
Volvox carteri f. nagariensis
XP_002955385
Volvox carteri f. nagariensis
Cross Link
Database
Entry ID
E-value
Start
End
InterPro ID
Description
PANTHER
PTHR24096
1.0E-238
11
542
No hit
NA
SUPERFAMILY
SSF56801
1.4E-144
22
542
No hit
NA
Pfam
PF00501
1.4E-108
56
471
IPR000873
AMP-dependent synthetase/ligase
ProSitePatterns
PS00455
NA
195
206
IPR020845
AMP-binding, conserved site
Pfam
PF13193
1.1E-5
511
538
IPR025110
Domain of unknown function DUF4009
Subcellular Localization
Localization 1
Localization
other cytoplasmic components
Evidence
Localization with GFP-fusion protein (GFP:cDNA)
Pubmed ID
10737809
Localization 2
Localization
peroxisome
Evidence
SUBAcon
Pubmed ID
23180787