Leaf Senescence DataBase

Basic information

Locus name

AT1G02860

Alias

BAH1/NLA

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Protein degradation/modification:protein ubiquitination

Effect for Senescence

delay

Gene Description

Mediates E2-dependent protein ubiquitination.

Evidence

Molecular evidence:Y2H [Ref 1]

References

1: Peng M, Hudson D, Schofield A, Tsao R, Yang R, Gu H, Bi YM, Rothstein SJ
Adaptation of Arabidopsis to nitrogen limitation involves induction of anthocyanin synthesis which is controlled by the NLA gene.
J. Exp. Bot. 2008;59(11):2933-44

Gene Ontology

molecular function

Sequence

miRNA Interaction

Details

target: AT1G02860.1
miRNA: ath-miR415
miRNA: ath-miR415
mfe: -29.6 kcal/mol
p-value: 0.000354

position:  122
target 5' C             U       U 3'
           UGUUCUGUUUUUG UUCUGUU
           ACAAGACAAAGAC GAGACAA
miRNA  3' U                       5'

target: AT1G02860.1
miRNA: ath-miR827
miRNA: ath-miR827
mfe: -36.7 kcal/mol
p-value: 0.000002

position:  258
target 5' U                    A 3'
           GUUUGUUGAUGGUCAUCUAA
           CAAACAACUACCAGUAGAUU
miRNA  3' U                      5'

target: AT1G02860.1
miRNA: ath-miR854a
miRNA: ath-miR854a
mfe: -29.3 kcal/mol
p-value: 0.010686

position:  907
target 5' C                A G    G 3'
           CUCCUCCU CCUGUUC U CAUU
           GAGGAGGA GGAUAGG A GUAG
miRNA  3'          G                5'

target: AT1G02860.1
miRNA: ath-miR854b
miRNA: ath-miR854b
mfe: -29.3 kcal/mol
p-value: 0.012125

position:  907
target 5' C                A G    G 3'
           CUCCUCCU CCUGUUC U CAUU
           GAGGAGGA GGAUAGG A GUAG
miRNA  3'          G                5'

target: AT1G02860.1
miRNA: ath-miR854c
miRNA: ath-miR854c
mfe: -29.3 kcal/mol
p-value: 0.010631

position:  907
target 5' C                A G    G 3'
           CUCCUCCU CCUGUUC U CAUU
           GAGGAGGA GGAUAGG A GUAG
miRNA  3'          G                5'

target: AT1G02860.1
miRNA: ath-miR854d
miRNA: ath-miR854d
mfe: -29.3 kcal/mol
p-value: 0.011284

position:  907
target 5' C                A G    G 3'
           CUCCUCCU CCUGUUC U CAUU
           GAGGAGGA GGAUAGG A GUAG
miRNA  3'          G                5'

target: AT1G02860.1
miRNA: ath-miR854e
miRNA: ath-miR854e
mfe: -29.3 kcal/mol
p-value: 0.012500

position:  907
target 5' C                A G    G 3'
           CUCCUCCU CCUGUUC U CAUU
           GAGGAGGA GGAUAGG A GUAG
miRNA  3'          G                5'

target: AT1G02860.2
miRNA: ath-miR415
miRNA: ath-miR415
mfe: -29.6 kcal/mol
p-value: 0.000352

position:  122
target 5' C             U       U 3'
           UGUUCUGUUUUUG UUCUGUU
           ACAAGACAAAGAC GAGACAA
miRNA  3' U                       5'

target: AT1G02860.2
miRNA: ath-miR827
miRNA: ath-miR827
mfe: -36.7 kcal/mol
p-value: 0.000002

position:  258
target 5' U                    A 3'
           GUUUGUUGAUGGUCAUCUAA
           CAAACAACUACCAGUAGAUU
miRNA  3' U                      5'

target: AT1G02860.2
miRNA: ath-miR854a
miRNA: ath-miR854a
mfe: -29.3 kcal/mol
p-value: 0.010632

position:  907
target 5' C                A G    G 3'
           CUCCUCCU CCUGUUC U CAUU
           GAGGAGGA GGAUAGG A GUAG
miRNA  3'          G                5'

target: AT1G02860.2
miRNA: ath-miR854b
miRNA: ath-miR854b
mfe: -29.3 kcal/mol
p-value: 0.012072

position:  907
target 5' C                A G    G 3'
           CUCCUCCU CCUGUUC U CAUU
           GAGGAGGA GGAUAGG A GUAG
miRNA  3'          G                5'

target: AT1G02860.2
miRNA: ath-miR854c
miRNA: ath-miR854c
mfe: -29.3 kcal/mol
p-value: 0.010579

position:  907
target 5' C                A G    G 3'
           CUCCUCCU CCUGUUC U CAUU
           GAGGAGGA GGAUAGG A GUAG
miRNA  3'          G                5'

target: AT1G02860.2
miRNA: ath-miR854d
miRNA: ath-miR854d
mfe: -29.3 kcal/mol
p-value: 0.011225

position:  907
target 5' C                A G    G 3'
           CUCCUCCU CCUGUUC U CAUU
           GAGGAGGA GGAUAGG A GUAG
miRNA  3'          G                5'

target: AT1G02860.2
miRNA: ath-miR854e
miRNA: ath-miR854e
mfe: -29.3 kcal/mol
p-value: 0.012445

position:  907
target 5' C                A G    G 3'
           CUCCUCCU CCUGUUC U CAUU
           GAGGAGGA GGAUAGG A GUAG
miRNA  3'          G                5'

Ortholog Group

Ortholog Groups: OG5_177363

Accession	Taxon
NP_001117218	Arabidopsis thaliana
NP_563667 ( AT1G02860 )	Arabidopsis thaliana
NP_001060606	Oryza sativa Japonica Group
29986.m001598	Ricinus communis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProSiteProfiles	PS51382	13.4	1	154	IPR004331	SPX, N-terminal
Pfam	PF03105	6.3E-10	109	156	IPR004331	SPX, N-terminal
PANTHER	PTHR25462	1.0E-50	134	321	No hit	NA
SUPERFAMILY	SSF57850	1.4E-13	224	283	No hit	NA
Pfam	PF13923	3.9E-9	228	280	No hit	NA
ProSiteProfiles	PS50089	12.0	231	280	IPR001841	Zinc finger, RING-type
SMART	SM00184	5.2E-8	231	279	IPR001841	Zinc finger, RING-type
ProSitePatterns	PS00518	NA	246	255	IPR017907	Zinc finger, RING-type, conserved site

Subcellular Localization

Localization

nucleus

Evidence

SUBAcon

Pubmed ID

23180787