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About
Basic information
Locus name
AT4G24240
Alias
WRKY7
Organism
Arabidopsis thaliana
Taxonomic identifier
[NCBI]
Function category
Transcription regulation:WRKY
Effect for Senescence
unclear
Gene Description
Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family
Evidence
Molecular evidence:Northern [Ref 1]
References
1: Robatzek S, Somssich IE
A new member of the Arabidopsis WRKY transcription factor family, AtWRKY6, is associated with both senescence- and defence-related processes.
Plant J. 2001 Oct;28(2):123-33
Gene Ontology
biological process
regulation of transcription, DNA-dependent
molecular function
sequence-specific DNA binding transcription factor activity
sequence-specific DNA binding
Sequence
AT4G24240.1 |
Genomic
|
mRNA
|
CDS
|
Protein
miRNA Interaction
Details
target: AT4G24240.1
miRNA:
ath-miR847
miRNA:
ath-miR847
mfe: -27.1 kcal/mol
p-value: 0.011973
position: 494
target 5' G U G A 3'
GUUGAGGAGGAGG GGA GUGG
UAGUUCUUCUUCU CCU CACU
miRNA 3' G 5'
Ortholog Group
Ortholog Groups:
OG5_212658
Accession
Taxon
NP_194155
( AT4G24240 )
Arabidopsis thaliana
30170.m013832
Ricinus communis
Cross Link
Database
Entry ID
E-value
Start
End
InterPro ID
Description
PANTHER
PTHR31282
4.1E-120
22
342
No hit
NA
Pfam
PF10533
1.2E-16
242
278
IPR018872
Zn-cluster domain
ProSiteProfiles
PS50811
29.9
275
341
IPR003657
DNA-binding WRKY
SUPERFAMILY
SSF118290
1.4E-25
278
339
IPR003657
DNA-binding WRKY
SMART
SM00774
5.9E-37
280
340
IPR003657
DNA-binding WRKY
Pfam
PF03106
5.4E-28
281
339
IPR003657
DNA-binding WRKY
Subcellular Localization
Localization
nucleus
Evidence
SUBAcon
Pubmed ID
23180787