Basic information
Locus name	AT1G13260
Alias	RAV1/EDF4
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:AP2/B3
Effect for Senescence	promote
Gene Description	Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature.
Evidence	Genetic evidence:Mutant [Ref 1]
References	1: Woo HR, Kim JH, Kim J, Kim J, Lee U, Song IJ, Kim JH, Lee HY, Nam HG, Lim PO The RAV1 transcription factor positively regulates leaf senescence in Arabidopsis. J. Exp. Bot. 2010 Sep;61(14):3947-57
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function DNA binding sequence-specific DNA binding transcription factor activity
Sequence	AT1G13260.1 | Genomic | mRNA | CDS | Protein
Mutant information
Mutated 1 Mutant name rav1 Mutant/Transgenic mutant Ecotype Col-0 Mutagenesis type T-DNA insertion_knock out
Mutated 2 Mutant name RAV1OX Mutant/Transgenic transgenic Ecotype Col-0 Mutagenesis type Transgene
Ortholog Group
Ortholog Groups: OG5_153242	Accession Taxon NP_172784 ( AT1G13260 ) Arabidopsis thaliana NP_173927 Arabidopsis thaliana NP_189201 Arabidopsis thaliana NP_564947 Arabidopsis thaliana NP_001043946 Oryza sativa Japonica Group NP_001056237 Oryza sativa Japonica Group e_gw1.63.77.1 Physcomitrella patens subsp. patens gw1.135.126.1 Physcomitrella patens subsp. patens 29738.m001050 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31140 6.0E-118 5 332 No hit NA Pfam PF00847 9.2E-10 60 107 IPR001471 AP2/ERF domain SUPERFAMILY SSF54171 1.8E-16 60 116 IPR016177 DNA-binding, integrase-type ProSiteProfiles PS51032 19.6 61 116 IPR001471 AP2/ERF domain SMART SM00380 5.2E-26 61 122 IPR001471 AP2/ERF domain SUPERFAMILY SSF101936 6.8E-33 186 294 IPR015300 DNA-binding pseudobarrel domain Pfam PF02362 2.8E-30 188 291 IPR003340 B3 DNA binding domain ProSiteProfiles PS50863 14.6 188 292 IPR003340 B3 DNA binding domain SMART SM01019 2.0E-26 188 292 IPR003340 B3 DNA binding domain
Subcellular Localization
Localization 1 Localization nucleus Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization nucleus Evidence Localization with GFP-ORF fusion protein (GFP:cDNA) Pubmed ID 15610358
Localization 3 Localization nucleus Evidence SUBAcon Pubmed ID 23180787