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Locus name | AT1G79900 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Nutrient recycling |
Effect for Senescence | unclear |
Gene Description | mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein |
Evidence | Genomic evidence:microarray data [Ref 1] |
References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
Gene Ontology | |
Sequence | AT1G79900.1 | Genomic | mRNA | CDS | Protein
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Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) |
Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
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Details | | target: AT1G79900.1 miRNA: ath-miR172c miRNA: ath-miR172c mfe: -28.0 kcal/mol p-value: 0.004708
position: 713 target 5' C U G G 3' CUG C AGC UCAUCAAGAUUC GAC G UCG AGUAGUUCUAAG miRNA 3' U A 5'
target: AT1G79900.1 miRNA: ath-miR172d miRNA: ath-miR172d mfe: -28.0 kcal/mol p-value: 0.005432
position: 713 target 5' C U G G 3' CUG C AGC UCAUCAAGAUUC GAC G UCG AGUAGUUCUAAG miRNA 3' U A 5'
target: AT1G79900.1 miRNA: ath-miR414 miRNA: ath-miR414 mfe: -25.6 kcal/mol p-value: 0.005263
position: 117 target 5' A C C 3' GA GAUGAUGGUGA GGUG CU CUACUACUACU CUAC miRNA 3' A G U U 5'
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Ortholog Group | |
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Ortholog Groups: OG5_129197 | |
Cross Link | |
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Localization | mitochondrion |
Evidence | SUBAcon |
Pubmed ID | 23180787 |