Basic information
Locus name	AT4G20110
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling
Effect for Senescence	unclear
Gene Description	vacuolar sorting receptor, putative similar to BP-80 vacuolar sorting receptor [Pisum sativum] GI:1737222; identical to vacuolar sorting receptor-like protein (GI:2827665) [Arabidopsis thaliana]
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function calcium ion binding
Sequence	AT4G20110.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT4G20110.1  miRNA: ath-miR866-3p miRNA: ath-miR866-3p mfe: -28.5 kcal/mol  p-value: 0.002098  position:  269  target 5' U                 A  C 3'             UCUUCAGAGAUGGGUUU GU              AGAAGUUUCUGCCUAAA CA   miRNA  3'                   A    5'
Ortholog Group
Ortholog Groups: OG5_131388	Accession Taxon NP_174375 Arabidopsis thaliana NP_179079 Arabidopsis thaliana NP_179081 Arabidopsis thaliana NP_180588 Arabidopsis thaliana NP_181040 Arabidopsis thaliana NP_190853 Arabidopsis thaliana NP_193744 ( AT4G20110 ) Arabidopsis thaliana NP_849954 Arabidopsis thaliana NP_849955 Arabidopsis thaliana 195476 Chlamydomonas reinhardtii ACO62789 Micromonas sp. RCC299 NP_001050034 Oryza sativa Japonica Group NP_001053838 Oryza sativa Japonica Group NP_001058298 Oryza sativa Japonica Group NP_001060643 Oryza sativa Japonica Group NP_001064400 Oryza sativa Japonica Group NP_001065992 Oryza sativa Japonica Group e_gw1.08.00.188.1 Ostreococcus tauri e_gw1.2.512.1 Physcomitrella patens subsp. patens e_gw1.200.19.1 Physcomitrella patens subsp. patens e_gw1.227.119.1 Physcomitrella patens subsp. patens e_gw1.39.36.1 Physcomitrella patens subsp. patens e_gw1.39.82.1 Physcomitrella patens subsp. patens e_gw1.76.110.1 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_447000013 Physcomitrella patens subsp. patens 28152.m000915 Ricinus communis 29915.m000476 Ricinus communis estExt_fgenesh1_pg.C_chr_150253 Thalassiosira pseudonana CCMP1335 estExt_gwp_gw1.C_chr_150152 Thalassiosira pseudonana CCMP1335 XP_002956789 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22765 3.1E-252 13 622 No hit NA Pfam PF02225 4.9E-11 62 164 IPR003137 Protease-associated domain, PA SUPERFAMILY SSF52025 6.2E-7 92 127 No hit NA Pfam PF12662 2.4E-6 499 517 IPR026823 Complement Clr-like EGF domain ProSitePatterns PS01187 NA 514 540 IPR018097 EGF-like calcium-binding, conserved site SMART SM00179 8.6E-4 514 556 IPR001881 EGF-like calcium-binding
Subcellular Localization
Localization 1 Localization Golgi apparatus Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization vacuole Evidence SUBAcon Pubmed ID 23180787