Basic information
Locus name	AT1G08920
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling
Effect for Senescence	unclear
Gene Description	sugar transporter, putative similar to ERD6 protein {Arabidopsis thaliana} GI:3123712, sugar-porter family proteins 1 and 2 [Arabidopsis thaliana] GI:14585699, GI:14585701; contains Pfam profile PF00083: major facilitator superfamily protein
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85 2: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process transmembrane transport cellular component membrane molecular function substrate-specific transmembrane transporter activity
Pathway	Reactome REACT_15518
Sequence	AT1G08920.1 | Genomic | mRNA | CDS | Protein AT1G08920.2 | Genomic | mRNA | CDS | Protein AT1G08920.3 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT1G08920.1  miRNA: ath-miR851-3p miRNA: ath-miR851-3p mfe: -26.3 kcal/mol  p-value: 0.004596  position:  296  target 5' U      C       G    U 3'             UCGUUU UGUUUGU GCUC              AGCAGA ACAAACG UGGG   miRNA  3' C      A       G    U 5'  target: AT1G08920.2  miRNA: ath-miR851-3p miRNA: ath-miR851-3p mfe: -26.3 kcal/mol  p-value: 0.004653  position:  296  target 5' U      C       G    U 3'             UCGUUU UGUUUGU GCUC              AGCAGA ACAAACG UGGG   miRNA  3' C      A       G    U 5'  target: AT1G08920.3  miRNA: ath-miR851-3p miRNA: ath-miR851-3p mfe: -26.3 kcal/mol  p-value: 0.003686  position:  284  target 5' U      C       G    U 3'             UCGUUU UGUUUGU GCUC              AGCAGA ACAAACG UGGG   miRNA  3' C      A       G    U 5'
Ortholog Group
Ortholog Groups: OG5_133646	Accession Taxon NP_001030640 Arabidopsis thaliana NP_001031005 Arabidopsis thaliana NP_001031006 Arabidopsis thaliana NP_001077495 Arabidopsis thaliana NP_001077496 Arabidopsis thaliana NP_001078111 Arabidopsis thaliana NP_001154590 Arabidopsis thaliana NP_172364 Arabidopsis thaliana NP_187191 Arabidopsis thaliana NP_563828 Arabidopsis thaliana NP_563829 Arabidopsis thaliana NP_563830 Arabidopsis thaliana NP_566247 Arabidopsis thaliana NP_566248 Arabidopsis thaliana NP_568493 Arabidopsis thaliana NP_568494 Arabidopsis thaliana NP_683530 Arabidopsis thaliana NP_849618 ( AT1G08920 ) Arabidopsis thaliana NP_974225 Arabidopsis thaliana 30128.m008706 Ricinus communis 30128.m008707 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24063 5.2E-284 1 474 No hit NA SUPERFAMILY SSF103473 8.2E-50 26 469 IPR016196 Major facilitator superfamily domain, general substrate transporter ProSiteProfiles PS50850 33.1 28 461 IPR020846 Major facilitator superfamily domain TIGRFAM TIGR00879 1.6E-73 31 468 IPR003663 Sugar/inositol transporter Pfam PF00083 1.4E-68 38 470 IPR005828 General substrate transporter ProSitePatterns PS00216 NA 89 105 IPR005829 Sugar transporter, conserved site PRINTS PR00171 2.7E-14 126 145 IPR003663 Sugar/inositol transporter PRINTS PR00171 2.7E-14 278 288 IPR003663 Sugar/inositol transporter PRINTS PR00171 2.7E-14 374 395 IPR003663 Sugar/inositol transporter PRINTS PR00171 2.7E-14 397 409 IPR003663 Sugar/inositol transporter
Subcellular Localization
Localization 1 Localization plasma membrane Evidence SUBAcon Pubmed ID 23180787
Localization 2 Localization vacuole Evidence SUBAcon Pubmed ID 23180787