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| Locus name | AT5G63850 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Nutrient recycling |
| Effect for Senescence | unclear |
| Gene Description | amino acid transporter 4, putative (AAP4) identical to amino acid transporter GI:608671 from [Arabidopsis thaliana]; |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Sequence | AT5G63850.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT5G63850.1
miRNA: ath-miR169g
miRNA: ath-miR169g
mfe: -29.2 kcal/mol
p-value: 0.008080
position: 431
target 5' G U C G U 3'
GGCUA AGGUCAACU G UUGGA
UCGGU UCCAGUUGA C GGCCU
miRNA 3' A 5'
target: AT5G63850.1
miRNA: ath-miR774
miRNA: ath-miR774
mfe: -26.7 kcal/mol
p-value: 0.009753
position: 1135
target 5' U C U C 3'
GUGGUUGUAUGGG UA GCCG
UACCGGUAUACCC AU UGGU
miRNA 3' C U 5'
target: AT5G63850.1
miRNA: ath-miR831
miRNA: ath-miR831
mfe: -26.2 kcal/mol
p-value: 0.015641
position: 1562
target 5' A U U U 3'
GAGA GGAGUAUGAAG GGGUU
UUCU UCUCAUGCUUC UCUAG
miRNA 3' G U 5'
target: AT5G63850.1
miRNA: ath-miR845a
miRNA: ath-miR845a
mfe: -24.5 kcal/mol
p-value: 0.016929
position: 637
target 5' A U U C G 3'
AUC G UUGGUAUCA GGUCG
UAG U AACCAUAGU UCGGC
miRNA 3' G U C 5'
target: AT5G63850.1
miRNA: ath-miR845b
miRNA: ath-miR845b
mfe: -25.8 kcal/mol
p-value: 0.006185
position: 637
target 5' A U C U G 3'
AUC GUUUGGUAUCA GG CGG
UAG UAAACCAUAGU UC GCU
miRNA 3' G U C 5'
target: AT5G63850.1
miRNA: ath-miR847
miRNA: ath-miR847
mfe: -26.8 kcal/mol
p-value: 0.017287
position: 1717
target 5' G G A U A 3'
AU AAGAAGAAGA GG GGUGG
UA UUCUUCUUCU CC UCACU
miRNA 3' G G 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_141588 | |
| Cross Link | |
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| Localization | plasma membrane |
| Evidence | SUBAcon |
| Pubmed ID | 23180787 |
