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Locus name | AT2G45170 |
Alias | ATG8E |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Nutrient recycling:Autophagy |
Effect for Senescence | delay |
Gene Description | Autophagy gene 8e |
Evidence | Molecular and physiologic evidence:GUS staining [Ref 1] |
References | 1: Slavikova S, Shy G, Yao Y, Glozman R, Levanony H, Pietrokovski S, Elazar Z, Galili GThe autophagy-associated Atg8 gene family operates both under favourable growth conditions and under starvation stresses in Arabidopsis plants.J. Exp. Bot. 2005 Nov;56(421):2839-49 |
Sequence | AT2G45170.1 | Genomic | mRNA | CDS | Protein AT2G45170.2 | Genomic | mRNA | CDS | Protein
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miRNA Interaction | |
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Details | | target: AT2G45170.1 miRNA: ath-miR159a miRNA: ath-miR159a mfe: -25.0 kcal/mol p-value: 0.017397
position: 474 target 5' C U U 3' GG GCU UCUUCAAUCUAA UC CGA GGAAGUUAGGUU miRNA 3' A U G U 5'
target: AT2G45170.1 miRNA: ath-miR159c miRNA: ath-miR159c mfe: -26.7 kcal/mol p-value: 0.009190
position: 474 target 5' C U U 3' GG GCU UCUUCAAUCUAA CC CGA GGAAGUUAGGUU miRNA 3' U U G U 5'
target: AT2G45170.1 miRNA: ath-miR780 miRNA: ath-miR780 mfe: -23.7 kcal/mol p-value: 0.009033
position: 399 target 5' A A C U 3' AUGUCA G GUUUACGAGGA UACGGU U UAAGUGCUUCU miRNA 3' C A U 5'
target: AT2G45170.2 miRNA: ath-miR159a miRNA: ath-miR159a mfe: -25.0 kcal/mol p-value: 0.018820
position: 542 target 5' C U U 3' GG GCU UCUUCAAUCUAA UC CGA GGAAGUUAGGUU miRNA 3' A U G U 5'
target: AT2G45170.2 miRNA: ath-miR159c miRNA: ath-miR159c mfe: -26.7 kcal/mol p-value: 0.010083
position: 542 target 5' C U U 3' GG GCU UCUUCAAUCUAA CC CGA GGAAGUUAGGUU miRNA 3' U U G U 5'
target: AT2G45170.2 miRNA: ath-miR780 miRNA: ath-miR780 mfe: -23.7 kcal/mol p-value: 0.009985
position: 467 target 5' A A C U 3' AUGUCA G GUUUACGAGGA UACGGU U UAAGUGCUUCU miRNA 3' C A U 5'
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Ortholog Group | |
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Ortholog Groups: OG5_126969 | |
Cross Link | |
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Localization 1 | Localization | cytosol | Evidence | SUBAcon | Pubmed ID | 23180787 |
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Localization 2 | Localization | vacuole | Evidence | SUBAcon | Pubmed ID | 23180787 |
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