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Locus name | AT4G21120 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Nutrient recycling |
Effect for Senescence | unclear |
Gene Description | amino acid permease family protein similar to cationic amino acid transporter-1 [Rattus norvegicus] GI:1589917; contains Pfam profile PF00324: Amino acid permease |
Evidence | Genomic evidence:microarray data [Ref 1] |
References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
Gene Ontology | |
Sequence | AT4G21120.1 | Genomic | mRNA | CDS | Protein
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Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) |
Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
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Details | | target: AT4G21120.1 miRNA: ath-miR157a miRNA: ath-miR157a mfe: -30.2 kcal/mol p-value: 0.001555
position: 631 target 5' A C C 3' UGCUCUC GUCUUUUGUUA ACGAGAG UAGAAGACAGU miRNA 3' C A U 5'
target: AT4G21120.1 miRNA: ath-miR157b miRNA: ath-miR157b mfe: -30.2 kcal/mol p-value: 0.001349
position: 631 target 5' A C C 3' UGCUCUC GUCUUUUGUUA ACGAGAG UAGAAGACAGU miRNA 3' C A U 5'
target: AT4G21120.1 miRNA: ath-miR157c miRNA: ath-miR157c mfe: -30.2 kcal/mol p-value: 0.000796
position: 631 target 5' A C C 3' UGCUCUC GUCUUUUGUUA ACGAGAG UAGAAGACAGU miRNA 3' C A U 5'
target: AT4G21120.1 miRNA: ath-miR417 miRNA: ath-miR417 mfe: -24.1 kcal/mol p-value: 0.020920
position: 712 target 5' C C G A 3' UCG GCGA UUCAU GCCUUC AGC UGUU AAGUG UGGAAG miRNA 3' U U A 5'
target: AT4G21120.1 miRNA: ath-miR822 miRNA: ath-miR822 mfe: -27.2 kcal/mol p-value: 0.013241
position: 1475 target 5' C G A 3' CGUG GU AAUGCUU CCGCG GUAC CG UUACGAA GGCGU miRNA 3' A U G 5'
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Ortholog Group | |
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Ortholog Groups: OG5_141558 | |
Cross Link | |
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Localization | plasma membrane |
Evidence | SUBAcon |
Pubmed ID | 23180787 |