Basic information
Locus name	AT4G24450
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	starch excess protein-related similar to SEX1 [Arabidopsis thaliana] GI:12044358
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process phosphorylation molecular function ATP binding kinase activity
Sequence	AT4G24450.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT4G24450.1  miRNA: ath-miR419 miRNA: ath-miR419 mfe: -23.6 kcal/mol  p-value: 0.094325  position:  2859  target 5' G             A      A 3'             AAUGUUCUCAGCA UC UGA              UUGUAGGAGUCGU AG AUU   miRNA  3' G             A  U     5'  target: AT4G24450.1  miRNA: ath-miR835-5p miRNA: ath-miR835-5p mfe: -20.9 kcal/mol  p-value: 0.065838  position:  376  target 5' A       U          U  U 3'             GUGGGGA GCAUAUGUAG GA              UAUUUCU UGUAUACGUU CU   miRNA  3' C                     U 5'  target: AT4G24450.1  miRNA: ath-miR843 miRNA: ath-miR843 mfe: -26.1 kcal/mol  p-value: 0.053452  position:  1258  target 5' A     G U         G    U 3'             CCAGU G AAGCUUGAC UGGA              GGUUA C UUCGAGCUG AUUU   miRNA  3' A                 G      5'
Ortholog Group
Ortholog Groups: OG5_137543	Accession Taxon NP_194176 ( AT4G24450 ) Arabidopsis thaliana NP_563877 Arabidopsis thaliana CMT547C Cyanidioschyzon merolae strain 10D 205870 Chlamydomonas reinhardtii ACO63072 Micromonas sp. RCC299 ACO64480 Micromonas sp. RCC299 NP_001057699 Oryza sativa Japonica Group estExt_gwp_GeneWisePlus.C_Chr_13.00010209 Ostreococcus tauri gw1.08.00.13.1 Ostreococcus tauri e_gw1.74.15.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_80051 Physcomitrella patens subsp. patens 27504.m000617 Ricinus communis 29596.m000711 Ricinus communis XP_002954283 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22931 0.0 39 1254 No hit NA SUPERFAMILY SSF56059 1.3E-35 969 1165 No hit NA Pfam PF01326 2.2E-32 1078 1277 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding SUPERFAMILY SSF56059 1.3E-35 1234 1277 No hit NA
Subcellular Localization
Localization	plastid
Evidence	SUBAcon
Pubmed ID	23180787