Basic information
Locus name	AT3G01270
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	pectate lyase family protein similar to pectate lyase P59 SP:P15722 from [Lycopersicon esculentum]
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function pectate lyase activity
Pathway	KEGG map00040 (EC 4.2.2.2)
Sequence	AT3G01270.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_160112	Accession Taxon NP_172894 Arabidopsis thaliana NP_178375 Arabidopsis thaliana NP_186776 ( AT3G01270 ) Arabidopsis thaliana NP_197015 Arabidopsis thaliana NP_001046281 Oryza sativa Japonica Group NP_001057945 Oryza sativa Japonica Group 29736.m002032 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description Pfam PF04431 1.8E-27 25 102 IPR007524 Pectate lyase, N-terminal PANTHER PTHR31683 6.7E-194 115 475 No hit NA SUPERFAMILY SSF51126 7.3E-98 125 466 IPR011050 Pectin lyase fold/virulence factor PRINTS PR00807 3.1E-79 147 164 IPR018082 AmbAllergen PRINTS PR00807 3.1E-79 171 196 IPR018082 AmbAllergen SMART SM00656 5.7E-94 199 396 IPR002022 Pectate lyase/Amb allergen Pfam PF00544 4.7E-56 203 390 IPR002022 Pectate lyase/Amb allergen PRINTS PR00807 3.1E-79 207 223 IPR018082 AmbAllergen PRINTS PR00807 3.1E-79 271 292 IPR018082 AmbAllergen PRINTS PR00807 3.1E-79 351 370 IPR018082 AmbAllergen PRINTS PR00807 3.1E-79 373 392 IPR018082 AmbAllergen PRINTS PR00807 3.1E-79 416 440 IPR018082 AmbAllergen PRINTS PR00807 3.1E-79 446 469 IPR018082 AmbAllergen