Basic information
Locus name	AT5G64570
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	glycosyl hydrolase family 3 protein
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process carbohydrate metabolic process molecular function hydrolase activity, hydrolyzing O-glycosyl compounds
Sequence	AT5G64570.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_131698	Accession Taxon NP_177929 Arabidopsis thaliana NP_188596 Arabidopsis thaliana NP_196535 Arabidopsis thaliana NP_196618 Arabidopsis thaliana NP_199747 Arabidopsis thaliana NP_201262 ( AT5G64570 ) Arabidopsis thaliana NP_563659 Arabidopsis thaliana NP_001048140 Oryza sativa Japonica Group NP_001053392 Oryza sativa Japonica Group NP_001054038 Oryza sativa Japonica Group NP_001067709 Oryza sativa Japonica Group NP_001067725 Oryza sativa Japonica Group NP_001067726 Oryza sativa Japonica Group NP_001068441 Oryza sativa Japonica Group NP_001068511 Oryza sativa Japonica Group e_gw1.406.20.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1960027 Physcomitrella patens subsp. patens 28152.m000917 Ricinus communis 29693.m002045 Ricinus communis 29889.m003265 Ricinus communis 29908.m006002 Ricinus communis 30076.m004675 Ricinus communis 30221.m002222 Ricinus communis 31518.m000032 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR30620 1.1E-271 14 784 IPR026892 Glycoside hydrolase family 3 SUPERFAMILY SSF51445 6.5E-90 59 413 IPR017853 Glycoside hydrolase, superfamily Pfam PF00933 1.0E-62 87 368 IPR001764 Glycoside hydrolase, family 3, N-terminal PRINTS PR00133 2.4E-6 130 149 IPR001764 Glycoside hydrolase, family 3, N-terminal PRINTS PR00133 2.4E-6 220 236 IPR001764 Glycoside hydrolase, family 3, N-terminal PRINTS PR00133 2.4E-6 294 312 IPR001764 Glycoside hydrolase, family 3, N-terminal Pfam PF01915 1.5E-51 414 643 IPR002772 Glycoside hydrolase family 3 C-terminal domain SUPERFAMILY SSF52279 1.4E-46 414 645 IPR002772 Glycoside hydrolase family 3 C-terminal domain Pfam PF14310 1.1E-7 709 775 IPR026891 Fibronectin type III-like domain
Subcellular Localization
Localization	extracellular
Evidence	SUBAcon
Pubmed ID	23180787