Basic information
Locus name	AT1G02850
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to hydroxyisourate hydrolase (GI:19569603) [Glycine max]
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85 2: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process carbohydrate metabolic process molecular function hydrolase activity, hydrolyzing O-glycosyl compounds
Sequence	AT1G02850.1 | Genomic | mRNA | CDS | Protein AT1G02850.2 | Genomic | mRNA | CDS | Protein AT1G02850.3 | Genomic | mRNA | CDS | Protein AT1G02850.4 | Genomic | mRNA | CDS | Protein AT1G02850.5 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_141631	Accession Taxon NP_001117217 Arabidopsis thaliana NP_563666 Arabidopsis thaliana NP_849578 Arabidopsis thaliana NP_973745 Arabidopsis thaliana NP_973746 ( AT1G02850 ) Arabidopsis thaliana NP_001045291 Oryza sativa Japonica Group NP_001055327 Oryza sativa Japonica Group NP_001055329 Oryza sativa Japonica Group NP_001055331 Oryza sativa Japonica Group NP_001055332 Oryza sativa Japonica Group 29986.m001601 Ricinus communis 29986.m001602 Ricinus communis 29986.m001603 Ricinus communis 29986.m001606 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10353 3.7E-270 3 487 IPR001360 Glycoside hydrolase, family 1 SUPERFAMILY SSF51445 1.7E-167 18 486 IPR017853 Glycoside hydrolase, superfamily Pfam PF00232 2.4E-150 28 486 IPR001360 Glycoside hydrolase, family 1 ProSitePatterns PS00653 NA 35 49 IPR018120 Glycoside hydrolase, family 1, active site PRINTS PR00131 1.1E-14 324 338 IPR001360 Glycoside hydrolase, family 1 PRINTS PR00131 1.1E-14 395 403 IPR001360 Glycoside hydrolase, family 1 PRINTS PR00131 1.1E-14 412 423 IPR001360 Glycoside hydrolase, family 1 PRINTS PR00131 1.1E-14 433 450 IPR001360 Glycoside hydrolase, family 1 PRINTS PR00131 1.1E-14 457 469 IPR001360 Glycoside hydrolase, family 1