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| Locus name | AT5G25820 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Lipid/Carbohydrate metabolism |
| Effect for Senescence | unclear |
| Gene Description | exostosin family protein contains Pfam profile: PF03016 exostosin family |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT5G25820.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT5G25820.1
miRNA: ath-miR399a
miRNA: ath-miR399a
mfe: -26.8 kcal/mol
p-value: 0.018577
position: 220
target 5' G C A U 3'
AGG GUGAGUCUCC U GGC
UCC CGUUUAGAGG A CCG
miRNA 3' G A A U 5'
target: AT5G25820.1
miRNA: ath-miR834
miRNA: ath-miR834
mfe: -33.3 kcal/mol
p-value: 0.001690
position: 501
target 5' C C 3'
UACUACCGCUACU UUACCG
AUGGUGGCGAUGA GAUGGU
miRNA 3' A C 5'
target: AT5G25820.1
miRNA: ath-miR857
miRNA: ath-miR857
mfe: -22.9 kcal/mol
p-value: 0.036274
position: 1091
target 5' A A A 3'
AUGCACCU UCGAUG ACAAAG
UAUGUGGA AGUUGU UGUUUU
miRNA 3' A 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_190472 | |
| Cross Link | |
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