Basic information
Locus name	AT3G12500
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	basic endochitinase identical to basic endochitinase precursor SP:P19171 from [Arabidopsis thaliana]
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process carbohydrate metabolic process molecular function chitin binding chitinase activity
Pathway	KEGG map00520 (EC 3.2.1.14)
Sequence	AT3G12500.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_133977	Accession Taxon NP_566426 ( AT3G12500 ) Arabidopsis thaliana NP_001050373 Oryza sativa Japonica Group NP_001055476 Oryza sativa Japonica Group NP_001055477 Oryza sativa Japonica Group NP_001058626 Oryza sativa Japonica Group e_gw1.134.82.1 Physcomitrella patens subsp. patens e_gw1.309.65.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_1780010 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_15000018 Physcomitrella patens subsp. patens 29797.m000356 Ricinus communis estExt_fgenesh1_pg.C_chr_100241 Thalassiosira pseudonana CCMP1335 estExt_fgenesh1_pg.C_chr_80115 Thalassiosira pseudonana CCMP1335 fgenesh1_pg.C_chr_2000602 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_19a_19000019 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_19a_19000020 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_19a_19000025 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_7000053 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_7000141 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22595 1.6E-207 1 322 No hit NA PIRSF PIRSF001060 3.4E-189 1 307 IPR016283 Glycoside hydrolase, family 19 Pfam PF00187 2.1E-18 20 60 IPR001002 Chitin-binding, type 1 ProSiteProfiles PS50941 11.0 20 62 IPR001002 Chitin-binding, type 1 SMART SM00270 4.9E-15 22 60 IPR001002 Chitin-binding, type 1 SUPERFAMILY SSF57016 10.0E-12 22 66 IPR001002 Chitin-binding, type 1 PRINTS PR00451 1.0E-5 30 38 IPR001002 Chitin-binding, type 1 ProSitePatterns PS00026 NA 32 51 IPR018371 Chitin-binding, type 1, conserved site PRINTS PR00451 1.0E-5 38 45 IPR001002 Chitin-binding, type 1 PRINTS PR00451 1.0E-5 45 52 IPR001002 Chitin-binding, type 1 SUPERFAMILY SSF53955 2.5E-111 73 313 IPR023346 Lysozyme-like domain Pfam PF00182 2.6E-124 76 307 IPR000726 Glycoside hydrolase, family 19, catalytic ProSitePatterns PS00773 NA 94 116 IPR000726 Glycoside hydrolase, family 19, catalytic ProSitePatterns PS00774 NA 220 230 IPR000726 Glycoside hydrolase, family 19, catalytic
Subcellular Localization
Localization	extracellular
Evidence	SUBAcon
Pubmed ID	23180787