Basic information
Locus name	AT2G03890
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	phosphatidylinositol 3- and 4-kinase family protein low similarity to phosphatidylinositol 4-kinase type-II beta [Homo sapiens] GI:20159767; contains Pfam profile PF00454: Phosphatidylinositol 3- and 4-kinase
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function phosphotransferase activity, alcohol group as acceptor
Sequence	AT2G03890.1 | Genomic | mRNA | CDS | Protein AT2G03890.2 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT2G03890.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -33.5 kcal/mol  p-value: 0.000254  position:  182  target 5' C              U    U 3'             GACGAUGAUGAUGA GAUG              CUGCUACUACUACU CUAC   miRNA  3' A              U    U 5'  target: AT2G03890.2  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -33.5 kcal/mol  p-value: 0.000208  position:  179  target 5' C              U    U 3'             GACGAUGAUGAUGA GAUG              CUGCUACUACUACU CUAC   miRNA  3' A              U    U 5'
Ortholog Group
Ortholog Groups: OG5_133443	Accession Taxon NP_563930 Arabidopsis thaliana NP_564242 Arabidopsis thaliana NP_565307 ( AT2G03890 ) Arabidopsis thaliana NP_973413 Arabidopsis thaliana 111968 Chlamydomonas reinhardtii NP_001054197 Oryza sativa Japonica Group NP_001057397 Oryza sativa Japonica Group NP_001062108 Oryza sativa Japonica Group NP_001063457 Oryza sativa Japonica Group e_gw1.25.50.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_1410045 Physcomitrella patens subsp. patens 29790.m000849 Ricinus communis 30138.m003897 Ricinus communis gw1.14.166.1 Thalassiosira pseudonana CCMP1335 XP_002950655 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF54236 4.2E-6 34 99 No hit NA Pfam PF00454 1.3E-42 98 313 IPR000403 Phosphatidylinositol 3-/4-kinase, catalytic domain PANTHER PTHR15245 3.4E-201 99 530 No hit NA Coils Coil NA 389 414 No hit NA