Basic information
Locus name	AT5G59320
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	lipid transfer protein 3 (LTP3) identical to lipid transfer protein 3 from Arabidopsis thaliana [gi:8571921]; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process lipid transport molecular function lipid binding
Sequence	AT5G59320.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_135466	Accession Taxon NP_001118321 Arabidopsis thaliana NP_179109 Arabidopsis thaliana NP_181387 Arabidopsis thaliana NP_181388 Arabidopsis thaliana NP_190727 Arabidopsis thaliana NP_190728 Arabidopsis thaliana NP_568904 Arabidopsis thaliana NP_568905 ( AT5G59320 ) Arabidopsis thaliana NP_973466 Arabidopsis thaliana NP_001065580 Oryza sativa Japonica Group NP_001065581 Oryza sativa Japonica Group NP_001065583 Oryza sativa Japonica Group NP_001065585 Oryza sativa Japonica Group NP_001065586 Oryza sativa Japonica Group NP_001065984 Oryza sativa Japonica Group NP_001065985 Oryza sativa Japonica Group NP_001065986 Oryza sativa Japonica Group NP_001065987 Oryza sativa Japonica Group NP_001065988 Oryza sativa Japonica Group NP_001065989 Oryza sativa Japonica Group NP_001067782 Oryza sativa Japonica Group 29044.m000171 Ricinus communis 29044.m000172 Ricinus communis 29915.m000465 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF47699 1.7E-27 24 115 IPR016140 Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain PRINTS PR00382 1.2E-28 26 42 IPR000528 Plant lipid transfer protein/Par allergen Pfam PF00234 4.0E-9 27 111 IPR016140 Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain SMART SM00499 7.4E-15 27 111 IPR016140 Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain PRINTS PR00382 1.2E-28 46 60 IPR000528 Plant lipid transfer protein/Par allergen PRINTS PR00382 1.2E-28 67 82 IPR000528 Plant lipid transfer protein/Par allergen PRINTS PR00382 1.2E-28 84 101 IPR000528 Plant lipid transfer protein/Par allergen ProSitePatterns PS00597 NA 93 114 IPR000528 Plant lipid transfer protein/Par allergen PRINTS PR00382 1.2E-28 102 113 IPR000528 Plant lipid transfer protein/Par allergen
Subcellular Localization
Localization	extracellular
Evidence	SUBAcon
Pubmed ID	23180787