Basic information
Locus name	AT2G30550
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	lipase class 3 family protein similar to DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana] GI:16215706; contains Pfam profile PF01764: Lipase
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process lipid metabolic process molecular function triglyceride lipase activity
Pathway	Reactome REACT_14797 REACT_604
Sequence	AT2G30550.1 | Genomic | mRNA | CDS | Protein AT2G30550.2 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT2G30550.1  miRNA: ath-miR832-5p miRNA: ath-miR832-5p mfe: -28.2 kcal/mol  p-value: 0.014994  position:  450  target 5' C                    U 3'             UUUCGAUU UCGAUCCC GC              AAAGCUAA GGCUAGGG CG   miRNA  3'          G        U  U 5'  target: AT2G30550.2  miRNA: ath-miR832-5p miRNA: ath-miR832-5p mfe: -28.2 kcal/mol  p-value: 0.016987  position:  461  target 5' C                    U 3'             UUUCGAUU UCGAUCCC GC              AAAGCUAA GGCUAGGG CG   miRNA  3'          G        U  U 5'
Ortholog Group
Ortholog Groups: OG5_170781	Accession Taxon NP_563772 Arabidopsis thaliana NP_565701 ( AT2G30550 ) Arabidopsis thaliana NP_849603 Arabidopsis thaliana NP_850148 Arabidopsis thaliana NP_001055438 Oryza sativa Japonica Group
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31403 1.2E-259 1 526 No hit NA SUPERFAMILY SSF53474 3.8E-35 190 429 No hit NA Pfam PF01764 3.3E-43 229 389 IPR002921 Lipase, class 3