Basic information
Locus name	AT5G27600
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	AMP-binding protein, putative similar to AMP-binding protein (MF39P) gi:1617274 from Brassica napus, long-chain-fatty-acid--CoA ligase - Brassica napus, EMBL:Z72152; contains Pfam AMP-binding enzyme domain PF00501
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process metabolic process molecular function catalytic activity
Sequence	AT5G27600.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT5G27600.1  miRNA: ath-miR839 miRNA: ath-miR839 mfe: -26.8 kcal/mol  p-value: 0.008780  position:  1368  target 5' C  U            A     U 3'             GG GCG UGAAGGGU UGGUA              CC UGC ACUUUCCA ACCAU   miRNA  3' C  U   U                5'
Ortholog Group
Ortholog Groups: OG5_126601	Accession Taxon NP_001031554 Arabidopsis thaliana NP_175368 Arabidopsis thaliana NP_176622 Arabidopsis thaliana NP_177882 Arabidopsis thaliana NP_178516 Arabidopsis thaliana NP_182246 Arabidopsis thaliana NP_192841 Arabidopsis thaliana NP_194116 Arabidopsis thaliana NP_198112 ( AT5G27600 ) Arabidopsis thaliana NP_566265 Arabidopsis thaliana NP_849934 Arabidopsis thaliana CME186C Cyanidioschyzon merolae strain 10D 113915 Chlamydomonas reinhardtii 123147 Chlamydomonas reinhardtii ACO64887 Micromonas sp. RCC299 NP_001043753 Oryza sativa Japonica Group NP_001043879 Oryza sativa Japonica Group NP_001054556 Oryza sativa Japonica Group NP_001055177 Oryza sativa Japonica Group NP_001056862 Oryza sativa Japonica Group NP_001065739 Oryza sativa Japonica Group NP_001065854 Oryza sativa Japonica Group NP_001066139 Oryza sativa Japonica Group NP_001066256 Oryza sativa Japonica Group NP_001068097 Oryza sativa Japonica Group 1200010108 Ostreococcus tauri fgenesh1_pm.C_Chr_05.0001000004 Ostreococcus tauri e_gw1.108.73.1 Physcomitrella patens subsp. patens e_gw1.113.15.1 Physcomitrella patens subsp. patens e_gw1.186.23.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_4080008 Physcomitrella patens subsp. patens estExt_Genewise1.C_4750023 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_120133 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2180009 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_470140 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_33000081 Physcomitrella patens subsp. patens 29732.m000322 Ricinus communis 29844.m003365 Ricinus communis 29851.m002473 Ricinus communis 29908.m006186 Ricinus communis 30076.m004616 Ricinus communis 30128.m008777 Ricinus communis 30190.m010831 Ricinus communis estExt_Genewise1.C_chr_130147 Thalassiosira pseudonana CCMP1335 gw1.1.110.1 Thalassiosira pseudonana CCMP1335 XP_002946900 Volvox carteri f. nagariensis XP_002947675 Volvox carteri f. nagariensis XP_002948135 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF56801 6.5E-125 71 369 No hit NA PANTHER PTHR24096 2.4E-259 81 690 No hit NA Pfam PF00501 1.6E-120 120 580 IPR000873 AMP-dependent synthetase/ligase ProSitePatterns PS00455 NA 266 277 IPR020845 AMP-binding, conserved site SUPERFAMILY SSF56801 6.5E-125 410 690 No hit NA
Subcellular Localization
Localization	peroxisome
Evidence	SUBAcon
Pubmed ID	23180787