Basic information
Locus name	AT1G62710
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification
Effect for Senescence	unclear
Gene Description	vacuolar processing enzyme beta / beta-VPE identical to SP|Q39044 Vacuolar processing enzyme, beta-isozyme precursor (EC 3.4.22.-) (Beta-VPE) {Arabidopsis thaliana}
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process proteolysis molecular function cysteine-type endopeptidase activity
Sequence	AT1G62710.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_130263	Accession Taxon NP_176458 ( AT1G62710 ) Arabidopsis thaliana NP_180165 Arabidopsis thaliana NP_188656 Arabidopsis thaliana NP_195020 Arabidopsis thaliana 196085 Chlamydomonas reinhardtii NP_001043344 Oryza sativa Japonica Group NP_001047562 Oryza sativa Japonica Group NP_001053428 Oryza sativa Japonica Group NP_001056504 Oryza sativa Japonica Group e_gw1.114.190.1 Physcomitrella patens subsp. patens e_gw1.16.167.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_360138 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_406000002 Physcomitrella patens subsp. patens 29794.m003351 Ricinus communis 30190.m010992 Ricinus communis XP_002953558 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF500139 0.0 1 486 No hit NA PIRSF PIRSF019663 0.0 2 486 IPR001096 Peptidase C13, legumain PANTHER PTHR12000 9.2E-298 42 474 IPR001096 Peptidase C13, legumain Pfam PF01650 1.6E-112 51 322 IPR001096 Peptidase C13, legumain PRINTS PR00776 8.3E-56 52 76 IPR001096 Peptidase C13, legumain PRINTS PR00776 8.3E-56 77 106 IPR001096 Peptidase C13, legumain PRINTS PR00776 8.3E-56 124 139 IPR001096 Peptidase C13, legumain PRINTS PR00776 8.3E-56 152 171 IPR001096 Peptidase C13, legumain PRINTS PR00776 8.3E-56 201 217 IPR001096 Peptidase C13, legumain
Subcellular Localization
Localization	vacuole
Evidence	SUBAcon
Pubmed ID	23180787