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| Locus name | AT2G39710 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Protein degradation/modification |
| Effect for Senescence | unclear |
| Gene Description | aspartyl protease family protein contains profile Pfam PF00026: Eukaryotic aspartyl protease; contains Prosite PS00141: Eukaryotic and viral aspartyl proteases active site.; |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT2G39710.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT2G39710.1
miRNA: ath-miR869
miRNA: ath-miR869
mfe: -24.4 kcal/mol
p-value: 0.043657
position: 235
target 5' C G U A 3'
UCGAU G UCUUGAUACCGGA
AGUUG U AGAGUUGUGGUCU
miRNA 3' C A 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_164601 | |
| Cross Link | |
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