Leaf Senescence DataBase

Basic information

Locus name

AT3G61160

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Protein degradation/modification:protein kinase and phosphatases

Effect for Senescence

unclear

Gene Description

shaggy-related protein kinase beta / ASK-beta (ASK2) identical to shaggy-related protein kinase beta SP:O23145 GI:2569931 from [Arabidopsis thaliana]

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology

biological process	protein phosphorylation
molecular function	ATP binding protein kinase activity protein serine/threonine kinase activity

Sequence

Microarray

Sampling

Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)

Comparation

Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.

miRNA Interaction

Details

target: AT3G61160.1
miRNA: ath-miR172a
miRNA: ath-miR172a
mfe: -24.6 kcal/mol
p-value: 0.032789

position:  1264
target 5' G   G                 A 3'
           GUG AG AUCAUUAAGAUUUU
           UAC UC UAGUAGUUCUAAGA
miRNA  3'     G  G                5'

target: AT3G61160.1
miRNA: ath-miR172b
miRNA: ath-miR172b
mfe: -24.6 kcal/mol
p-value: 0.028577

position:  1264
target 5' G   G                 A 3'
           GUG AG AUCAUUAAGAUUUU
           UAC UC UAGUAGUUCUAAGA
miRNA  3'     G  G                5'

target: AT3G61160.1
miRNA: ath-miR172e
miRNA: ath-miR172e
mfe: -24.5 kcal/mol
p-value: 0.037057

position:  1264
target 5' G   G                 A 3'
           GUG AG AUCAUUAAGAUUUU
           UAC UC UAGUAGUUCUAAGG
miRNA  3'     G  G                5'

target: AT3G61160.2
miRNA: ath-miR172a
miRNA: ath-miR172a
mfe: -24.6 kcal/mol
p-value: 0.032068

position:  1227
target 5' G   G                 A 3'
           GUG AG AUCAUUAAGAUUUU
           UAC UC UAGUAGUUCUAAGA
miRNA  3'     G  G                5'

target: AT3G61160.2
miRNA: ath-miR172b
miRNA: ath-miR172b
mfe: -24.6 kcal/mol
p-value: 0.028015

position:  1227
target 5' G   G                 A 3'
           GUG AG AUCAUUAAGAUUUU
           UAC UC UAGUAGUUCUAAGA
miRNA  3'     G  G                5'

target: AT3G61160.2
miRNA: ath-miR172e
miRNA: ath-miR172e
mfe: -24.5 kcal/mol
p-value: 0.036219

position:  1227
target 5' G   G                 A 3'
           GUG AG AUCAUUAAGAUUUU
           UAC UC UAGUAGUUCUAAGG
miRNA  3'     G  G                5'

Ortholog Group

Ortholog Groups: OG5_126888

Accession	Taxon
NP_001031013	Arabidopsis thaliana
NP_001077498	Arabidopsis thaliana
NP_001077499	Arabidopsis thaliana
NP_001117510	Arabidopsis thaliana
NP_172127	Arabidopsis thaliana
NP_172455	Arabidopsis thaliana
NP_176096	Arabidopsis thaliana
NP_180655	Arabidopsis thaliana
NP_187235	Arabidopsis thaliana
NP_191675	Arabidopsis thaliana
NP_191981	Arabidopsis thaliana
NP_193606	Arabidopsis thaliana
NP_196968	Arabidopsis thaliana
NP_568486	Arabidopsis thaliana
NP_849627	Arabidopsis thaliana
NP_850520	Arabidopsis thaliana
NP_973771	Arabidopsis thaliana
NP_973801	Arabidopsis thaliana
NP_974471 ( AT3G61160 )	Arabidopsis thaliana
CMO218C	Cyanidioschyzon merolae strain 10D
114692	Chlamydomonas reinhardtii
NP_113094	Guillardia theta
ACO65672	Micromonas sp. RCC299
NP_001042602	Oryza sativa Japonica Group
NP_001042804	Oryza sativa Japonica Group
NP_001046390	Oryza sativa Japonica Group
NP_001051854	Oryza sativa Japonica Group
NP_001054564	Oryza sativa Japonica Group
NP_001054901	Oryza sativa Japonica Group
NP_001057824	Oryza sativa Japonica Group
NP_001065093	Oryza sativa Japonica Group
estExt_gwp_GeneWisePlus.C_Chr_04.00010458	Ostreococcus tauri
estExt_Genewise1.C_600049	Physcomitrella patens subsp. patens
estExt_Genewise1.C_740128	Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_600053	Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_520009	Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_3060031	Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_3060047	Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_391000008	Physcomitrella patens subsp. patens
30026.m001445	Ricinus communis
30076.m004590	Ricinus communis
30128.m008964	Ricinus communis
30174.m008972	Ricinus communis
e_gw1.22.64.1	Thalassiosira pseudonana CCMP1335
XP_002948316	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR24057	2.1E-221	23	430	No hit	NA
SUPERFAMILY	SSF56112	1.4E-86	99	411	IPR011009	Protein kinase-like domain
Pfam	PF00069	4.5E-64	102	386	IPR000719	Protein kinase, catalytic domain
ProSiteProfiles	PS50011	43.7	102	386	IPR000719	Protein kinase, catalytic domain
SMART	SM00220	1.0E-88	102	386	IPR002290	Serine/threonine- / dual specificity protein kinase, catalytic domain
ProSitePatterns	PS00107	NA	108	132	IPR017441	Protein kinase, ATP binding site
ProSitePatterns	PS00108	NA	223	235	IPR008271	Serine/threonine-protein kinase, active site

Subcellular Localization

Localization

cytosol

Evidence

SUBAcon

Pubmed ID

23180787