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| Locus name | AT5G39030 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Protein degradation/modification:protein kinase and phosphatases |
| Effect for Senescence | unclear |
| Gene Description | protein kinase family protein contains protein kinase domain, Pfam:PF00069 |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT5G39030.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT5G39030.1
miRNA: ath-miR1886
miRNA: ath-miR1886
mfe: -22.4 kcal/mol
p-value: 0.028551
position: 373
target 5' A U C U 3'
CC GUCAA GAUUUCA UCUC
GG UAGUU CUAAAGU AGAG
miRNA 3' U U U 5'
target: AT5G39030.1
miRNA: ath-miR413
miRNA: ath-miR413
mfe: -25.7 kcal/mol
p-value: 0.038055
position: 1963
target 5' U A C A 3'
UG UGGA ACAAGAGGAACUAU
AC GUCU UGUUCUCUUUGAUA
miRNA 3' C 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_130809 | |
| Cross Link | |
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| Localization | plasma membrane |
| Evidence | SUBAcon |
| Pubmed ID | 23180787 |
