Dog online provides data visualization and data analysis tools for iDog. Users can use analysis tools to analysis own data and visualized the results online.
Currently, iDog uses jbrowse and GBrowse to provide data visualization. Users can visualize the SNP, Dhole and Wolf Genome as well as the synteny comparison between them.
1.1 Dog SNP Genome Browser
Dog SNP Genome Browser provides refsnp, individual snp, GC as well as the statistics data at 10kb, 100kb, and 300kb window size. It also integrates gene, transcript data for users to view.
iDog provides several preloaded tools for users to analyze own data as well as view the data result online.
Take BWA tool as example
When click the BWA tool, a web page will be opened. Click the “View Demo” will open the demo result page for BWA. Users can fill the input parameters in the page, then click the submit button. A task will be generated and run under back end. At the same time, an email will be sent if user fill the email address. The run time depends on the uploaded data size.
The BWA submit page:
The BWA result page: