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Accession BioProject Description Samples Submitter Release Date
GVM000076 PRJCA002554 In this study, we re-sequenced the genome of 250 soybean landraces and cultivars originated from China, North America and Europe to an average of 11x depth and over 95% coverage. 250 China Agricultural University 2020-07-31
GVM000075 PRJCA002978 Uveitis is an intraocular inflammatory disease which can lead to serious visual impairment. To discover the exact genetic background of uveitis, we developed an SNP database specific for uveitis, UVEOGENE, which includes 370 genes and 918 SNPs covering 14 uveitis entities and 40 populations from 286 PubMed English language papers. Stratification analyses by gender, HLA status, and different clinical features were also extracted from the publications. As a result, 371 associations were judged as statistically significant. These associations were also shared with Global Variome shared Leiden Open Variation Database (LOVD)(https://databases.lovd.nl/shared/genes). Based on these associations, we investigated the genetic relationship among three widely studied uveitis entities including Behcet's disease (BD), Vogt Koyanagi Harada (VKH) disease, and acute anterior uveitis (AAU). Furthermore, UVEOGENE can be used as a reliable and informative resource to identify similarities as well as differences in the genetic susceptibility among uveitis and other autoimmune diseases. UVEOGENE is freely accessible at http://www.uvogene.com. 26 The First Affiliated Hospital of Chongqing Medical University 2020-07-10
GVM000068 PRJCA002639 Copy number variations (CNVs) are important genomic structural variations, and can give rise to significant phenotypic diversity. In this study, we used high-density 600K SNP arrays to detect CNVs in two synthetic lines of sheep (DS and SHH) and in Hu sheep (a local Chinese breed) from Xinjiang Academy of Agricultural and Reclamation Science. 270 Northeast Agricultural University 2022-05-06
GVM000067 PRJCA002432 we developed a method OutcrossSeq for mapping agronomically important loci in outcrossing crop based on whole-genome low-cost resequencing of large genetic population.We applied OutcrossSeq in tuber crop (sweet potato, autopolyploidy) 2 Shanghai Normal University 2020-12-31
GVM000066 PRJCA002432 we developed a method OutcrossSeq for mapping agronomically important loci in outcrossing crop based on whole-genome low-cost resequencing of large genetic population.We applied OutcrossSeq in tuber crop (sweet potato, autopolyploidy) 1807 Shanghai Normal University 2020-12-31
GVM000065 PRJCA002431 we developed a method OutcrossSeq for mapping agronomically important loci in outcrossing crop based on whole-genome low-cost resequencing of large genetic population.We applied OutcrossSeq in hybrid crops (maize,Double Cross 804 Shanghai Normal University 2020-12-31
GVM000064 PRJCA002430 we developed a method OutcrossSeq for mapping agronomically important loci in outcrossing crop based on whole-genome low-cost resequencing of large genetic population.We applied OutcrossSeq in hybrid crops (rice,Double Cross 981 Shanghai Normal University 2020-12-31
GVM000063 PRJCA002030 In this project, we provide 26 de nove assembly soybean genomes and 2,898 whole genome sequencing dataset of soybean accessions for constructing a pan-genome and discovering genetic diversity of soybean. 2898 Institute of Genetics and Developmental Biology, Chinese Academy of Sciences 2020-04-09
GVM000062 PRJCA002429 We developed a method OutcrossSeq for mapping agronomically important loci in outcrossing crop based on whole-genome low-cost resequencing of large genetic population.We applied OutcrossSeq in tree crop (walnut tree, Diploid Outcrossing) 186 Shanghai Normal University 2020-12-31
GVM000061 PRJCA002419 Reconstructing geographically/linguistically/culturally diverse populations via genome wide variations . 383 Institute of Forensic Medicine 2030-02-28