Basic Information
| SNP ID | osa9 |
|---|---|
| Organism | Oryza sativa Japonica |
| Genome Assembly | IRGSP1.0 |
| Version | 1 |
| Variation Class | SNP |
| Position | chr1:1277 |
| RefSNP Alleles | T/C |
| Synonyms ID |
Gene Annotation
| Gene ID | Transcript ID | Gene Symbol | Variant Effect | Biotype | cDNA Position | Allele Change | Protein ID | Protein Position | Residue Change |
|---|---|---|---|---|---|---|---|---|---|
| Os01g0100100 | Os01t0100100-01 | - | upstream_gene_variant | mRNA | 0 | - => - | Os01t0100100-01 | 0 | - => - |
Population Diversity
| Population | Sample # | Allele:Frequency | Genotype:Frequency |
|---|---|---|---|
| Indica | 2567 | T:0.82; C:0.18; | TT:0.82; CC:0.17; CT:0.01; |
| japonica | 1499 | T:0.97; C:0.03; | TT:0.97; CC:0.03; CT:0.00; |
| Other | 635 | T:0.87; C:0.13; | TT:0.87; CC:0.12; CT:0.01; |
| wild | 451 | T:0.73; C:0.27; | TT:0.72; CC:0.27; CT:0.01; |