Basic Information
SNP ID | osa7 |
---|---|
Organism | Oryza sativa Japonica |
Genome Assembly | IRGSP1.0 |
Version | 1 |
Variation Class | SNP |
Position | chr1:1249 |
RefSNP Alleles | A/C |
Synonyms ID |
Gene Annotation
Gene ID | Transcript ID | Gene Symbol | Variant Effect | Biotype | cDNA Position | Allele Change | Protein ID | Protein Position | Residue Change |
---|---|---|---|---|---|---|---|---|---|
Os01g0100100 | Os01t0100100-01 | - | upstream_gene_variant | mRNA | 0 | - => - | Os01t0100100-01 | 0 | - => - |
Population Diversity
Population | Sample # | Allele:Frequency | Genotype:Frequency |
---|---|---|---|
Indica | 2567 | A:0.80; C:0.20; | AA:0.79; CC:0.19; AC:0.01; |
japonica | 1499 | A:0.97; C:0.03; | AA:0.97; CC:0.03; AC:0.00; |
Other | 635 | A:0.87; C:0.13; | AA:0.86; CC:0.13; AC:0.02; |
wild | 451 | A:0.61; C:0.39; | AA:0.61; CC:0.38; AC:0.01; |