Basic Information
| SNP ID | osa4 |
|---|---|
| Organism | Oryza sativa Japonica |
| Genome Assembly | IRGSP1.0 |
| Version | 1 |
| Variation Class | SNP |
| Position | chr1:1203 |
| RefSNP Alleles | T/C |
| Synonyms ID |
Gene Annotation
| Gene ID | Transcript ID | Gene Symbol | Variant Effect | Biotype | cDNA Position | Allele Change | Protein ID | Protein Position | Residue Change |
|---|---|---|---|---|---|---|---|---|---|
| Os01g0100100 | Os01t0100100-01 | - | upstream_gene_variant | mRNA | 0 | - => - | Os01t0100100-01 | 0 | - => - |
Population Diversity
| Population | Sample # | Allele:Frequency | Genotype:Frequency |
|---|---|---|---|
| Indica | 2567 | T:0.78; C:0.22; | TT:0.77; CC:0.21; CT:0.01; |
| japonica | 1499 | T:0.98; C:0.02; | TT:0.98; CC:0.02; CT:0.00; |
| Other | 635 | T:0.87; C:0.13; | TT:0.87; CC:0.12; CT:0.01; |
| wild | 451 | T:0.81; C:0.19; | CT:0.01; TT:0.80; CC:0.19; |