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Genome Assembly

Position and Type

 
 
 
 

Consequence Type

HIGH             

MODERATE 

LOW             

MODIFIER             

Annotation Gene Information

 
 
 
 
 
 
 
mRNA　 rRNA　 miRNA
 
 

Minor Allele Frequency

  (0-0.5)

ClinVar Traits

Effect             

     Initial 

OMIM Traits

    Initial         

GWAS-Catalog Traits

Ontology             

Genotype to Phenotype

growth
drought tolerance
metabolite
agronomic traits
resistance
flowering time
forage quality
yield

Pfam

 
 
 

Setting Properties

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All VarID
 Position
 Alleles
 MAF
 Consequence Type|Effect
 Gene
 dbSNP
cfa1 chr1:171 C/T T:0.0030 transcript_ablation|HIGH;  
cfa2 chr1:193 A/T T:0.0082 transcript_ablation|HIGH;  
cfa3 chr1:194 G/T T:0.0028 transcript_ablation|HIGH;  
cfa4 chr1:196 G/A A:0.0027 transcript_ablation|HIGH;  
cfa5 chr1:197 T/G,C G:0.0082 transcript_ablation|HIGH;  
cfa6 chr1:204 C/T T:0.0130 transcript_ablation|HIGH;  
cfa7 chr1:205 C/G,T G:0.1734 transcript_ablation|HIGH;  
cfa8 chr1:206 C/A A:0.0227 transcript_ablation|HIGH;  
cfa9 chr1:207 A/C C:0.0049 transcript_ablation|HIGH;  
cfa10 chr1:208 T/C,G,A T:0.3314 transcript_ablation|HIGH;