cox1 - Plant Editosome Database - BIG Data Center

Summary

Gene: cox1
Function: Cytochrome c oxidase
Species: 24
Editing Factors:4 (EMP21, PpPPR_78, SlORRM4, SMK4)
Editing Types:
C-to-U (472)
U-to-C (8)
Editing Events: 532 (C-to-U: 472   NA: 52   U-to-C: 8)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Asclepias syriacaMitochondrion4
NA: 4
325552-326277
327233-328084
CDS
CDS
CDS
CDS
+NA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Brassica napusMitochondrion2
C-to-U: 2
185529CDS
CDS
-C-to-U
C-to-U
CCC=>CUC
CCC=>CUC
P=>L
P=>L
Carica papayaMitochondrion1
NA: 1
191125-192708CDS-NANA=>NANA=>NA
Citrullus lanatusMitochondrion18
C-to-U: 18
11
1728
2004
2046
2153
2241
2246
2369
2372
2400
242
254
443
452
515
551
590
668
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCU=>UUU
UCA=>UUA
CCA=>CUA
UCC=>UUC
UCA=>UUA
UCU=>UUU
CCG=>CYG
UCU=>UUU
CCG=>CUG
UCA=>UUA
UCU=>UUU
CGU=>UGU
CCG=>CUG
CUC=>UUC
UCC=>UUC
CGU=>UGU
UCC=>UUC
CAC=>UAC
S=>F
S=>L
P=>L
S=>F
S=>L
S=>F
P=>P/L
S=>F
P=>L
S=>L
S=>F
R=>C
P=>L
L=>F
S=>F
R=>C
S=>F
H=>Y
Cucumis sativusMitochondrion2
NA: 2
1-726
1735-2592
CDS
CDS
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cucurbita pepoMitochondrion18
C-to-U: 18
1079
1186
1274
1279
1402
1405
1433
242
254
443
452
515
551
590
668
715
746
761
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCC=>CUC
UCA=>UUA
CCG=>CUG
UCC=>UUC
CCA=>CUA
CCG=>CUG
UCU=>UUU
UCU=>UUU
UCA=>UUA
UCA=>UYA
UCU=>UUU
UCC=>UUC
CGG=>UGG
CGU=>UGU
CAC=>UAC
UCU=>UUU
CGU=>UGU
CUC=>UUC
P=>L
S=>L
P=>L
S=>F
P=>L
P=>L
S=>F
S=>F
S=>L
S=>S/L
S=>F
S=>F
R=>W
R=>C
H=>Y
S=>F
R=>C
L=>F
Cycas taitungensisMitochondrion2
C-to-U: 2
155293CDS
CDS
-C-to-U
C-to-U
ACG=>AUG
ACG=>AUG
T=>M
T=>M
Ginkgo bilobaMitochondrion1
C-to-U: 1
50971CDS-C-to-UGCA=>GUAA=>V
Hyoscyamus nigerMitochondrion1
C-to-U: 1
23449CDS+C-to-UACG=>AUGT=>M
Liriodendron tulipiferaMitochondrion2
NA: 2
328527-330110CDS
CDS
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Lotus japonicusMitochondrion36
C-to-U: 36
1079
11
1186
1402
1405
1433
15
242
254
443
452
515
551
590
668
715
746
761
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCU=>UUU
UCU=>UUU
UCC=>UUC
CCA=>CUA
CGU=>UGU
UCA=>UUA
UCU=>UUU
UCC=>UUC
CGG=>UGG
UCU=>UUU
CCC=>CUC
GUC=>GUU
CCG=>CUG
UCU=>UUU
CAC=>UAC
CCG=>CUG
UCA=>UUA
UCU=>UUU
CCG=>CUG
CGU=>UGU
UCU=>UUU
CCC=>CUC
GUC=>GUU
UCA=>UUA
UCA=>UUA
CAC=>UAC
CCG=>CUG
UCC=>UUC
CCA=>CUA
CGU=>UGU
UCU=>UUU
UCA=>UUA
UCC=>UUC
CGG=>UGG
CGU=>UGU
UCA=>UUA
S=>F
S=>F
S=>F
P=>L
R=>C
S=>L
S=>F
S=>F
R=>W
S=>F
P=>L
V=>V
P=>L
S=>F
H=>Y
P=>L
S=>L
S=>F
P=>L
R=>C
S=>F
P=>L
V=>V
S=>L
S=>L
H=>Y
P=>L
S=>F
P=>L
R=>C
S=>F
S=>L
S=>F
R=>W
R=>C
S=>L
Millettia pinnataMitochondrion36
C-to-U: 36
1079
11
1186
1402
1405
1433
15
242
254
443
452
515
551
590
668
715
746
761
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CGG=>UGG
CGU=>UGU
UCA=>UUA
UCU=>UUU
UCC=>UUC
UCU=>UUU
UCU=>UUU
CCC=>CUC
GUC=>GUU
CCG=>CUG
UCU=>UUU
CAC=>UAC
CCG=>CUG
UCA=>UUA
GUC=>GUU
CCG=>CUG
CGU=>UGU
UCU=>UUU
CCC=>CUC
CAC=>UAC
CCG=>CUG
UCA=>UUA
UCA=>UUA
UCU=>UUU
UCC=>UUC
CCA=>CUA
CGU=>UGU
UCA=>UUA
UCA=>UUA
UCC=>UUC
CGG=>UGG
CGU=>UGU
CCA=>CUA
UCU=>UUU
UCU=>UUU
UCC=>UUC
R=>W
R=>C
S=>L
S=>F
S=>F
S=>F
S=>F
P=>L
V=>V
P=>L
S=>F
H=>Y
P=>L
S=>L
V=>V
P=>L
R=>C
S=>F
P=>L
H=>Y
P=>L
S=>L
S=>L
S=>F
S=>F
P=>L
R=>C
S=>L
S=>L
S=>F
R=>W
R=>C
P=>L
S=>F
S=>F
S=>F
Nelumbo nuciferaMitochondrion16
C-to-U: 15
U-to-C: 1
197099-198682
197184
197194
197250
197278
197281
197404
197409
197424
198401
198486
198487
198586
198668
198672
198681
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
-
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCG=>CUG
CCG=>CUG
CGU=>UGU
CCU=>UCU
CUC=>UUC
CCU=>CUU
UGC=>CGC
UCU=>UUU
CCA=>UCA
UCA=>UUA
GUC=>GUU
NA=>AUG
ACG=>AUG
CCG=>CUG
GAC=>GAU
CGU=>UGU
P=>L
P=>L
R=>C
P=>S
L=>F
P=>L
C=>R
S=>F
P=>S
S=>L
V=>V
NA=>M
U=>M
P=>L
D=>D
R=>C
Nicotiana attenuataMitochondrion2
C-to-U: 2
168606CDS
CDS
+C-to-U
C-to-U
ACG=>AUG
ACG=>AUG
T=>M
T=>M
Nothoceros aenigmaticusMitochondrion10
NA: 8
U-to-C: 2
103159-103264
106123-106166
94796-95066
94885
99320-100467
CDS
CDS
CDS
CDS
NA
CDS
NA
CDS
CDS
CDS
-
+
NA
NA
NA
NA
U-to-C
NA
U-to-C
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Ophioglossum californicumMitochondrion72
C-to-U: 72
170399
170498
170521
170522
170542
170567
170627
170633
170650
170651
170746
170756
170759
170765
170882
170894
170907
171107
171185
171208
171216
171218
171221
171341
171356
171412
171446
171479
171734
171782
171869
171873
171957
171958
171959
171960
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCC=>UUC
UCA=>UUA
CCC=>CUC
NA=>NA
UCA=>UUA
UUC=>UUU
UUC=>UUU
CCU=>CUU
UCU=>UUU
UCA=>UUA
UUC=>UUU
CAU=>UAU
UCU=>UUU
NA=>NA
CCA=>CUA
UCC=>UUC
UCU=>UUU
UUC=>UUU
CGG=>UGG
CUU=>UUU
UCU=>UUU
UCA=>UUA
NA=>NA
UCC=>UCU
UCU=>UUU
UCA=>UUA
UCU=>UUU
AAC=>AAU
UCU=>UUU
NA=>NA
CCU=>CUU
UCA=>UUA
UCC=>UUC
UCG=>UUG
ACG=>AUG
UUC=>UUU
CCC=>CUC
UCA=>UUA
UCA=>UUA
UCA=>UUA
NA=>NA
CCU=>CUU
UUC=>UUU
UCC=>UUC
UUC=>UUU
UCU=>UUU
UCU=>UUU
UCA=>UUA
NA=>NA
CAU=>UAU
UCC=>UUC
UCU=>UUU
CCA=>CUA
UCA=>UUA
UCA=>UUA
CGG=>UGG
NA=>NA
UCU=>UUU
UCU=>UUU
UUC=>UUU
UCC=>UCU
CUU=>UUU
UCC=>UUC
UCU=>UUU
ACG=>AUG
CCU=>CUU
AAC=>AAU
NA=>NA
UCG=>UUG
UCA=>UUA
UCU=>UUU
S=>L
S=>F
S=>L
P=>L
NA=>NA
S=>L
F=>F
F=>F
P=>L
S=>F
S=>L
F=>F
H=>Y
S=>F
NA=>NA
P=>L
S=>F
S=>F
F=>F
R=>W
L=>F
S=>F
S=>L
NA=>NA
S=>S
S=>F
S=>L
S=>F
N=>N
S=>F
NA=>NA
P=>L
S=>L
S=>F
S=>L
T=>M
F=>F
P=>L
S=>L
S=>L
S=>L
NA=>NA
P=>L
F=>F
S=>F
F=>F
S=>F
S=>F
S=>L
NA=>NA
H=>Y
S=>F
S=>F
P=>L
S=>L
S=>L
R=>W
NA=>NA
S=>F
S=>F
F=>F
S=>S
L=>F
S=>F
S=>F
T=>M
P=>L
N=>N
NA=>NA
S=>L
S=>L
S=>F
Oryza sativa Japonica GroupMitochondrion4
C-to-U: 4
339974
339977
340005
340061
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
UCG=>UUG
UCG=>UUG
UCC=>UUC
UUC=>UUU
S=>L
S=>L
S=>F
F=>F
Phaeoceros laevisMitochondrion6
NA: 4
U-to-C: 2
162724-162994
167253-168400
168253
171147-171252
171164
174217-174260
NA
CDS
NA
CDS
CDS
CDS
+
-
U-to-C
NA
U-to-C
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Phlegmariurus squarrosusMitochondrion4
NA: 4
171578-172027
175622-175775
178654-179325
182233-182555
CDS
CDS
CDS
CDS
-NA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Psilotum nudumMitochondrion44
C-to-U: 43
U-to-C: 1
260031
260241
260307
260394
260445
260454
260457
260540
260544
260555
260561
260576
260696
260730
260760
3137
3497
3500
3502
3509
3526
3533
3538
3539
3580
3621
3653
3683
3687
3830
3864
3907
3911
3923
3935
3936
3972
3973
3979
4192
4197
4199
4200
4420
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
Intron
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
3'UTR
CDS
CDS
CDS
CDS
CDS
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCC=>UCC
CCA=>CUA
UCC=>UUC
CAC=>UAC
ACG=>AUG
UCU=>UUU
UCU=>UUU
CGG=>UGG
GCG=>GUG
CCC=>CUC
UUC=>UUU
CCG=>UCG
NA=>NA
UCG=>UUG
CAU=>UAU
CGU=>UGU
CCU=>CUU
UCG=>UUG
CAU=>UAU
GAC=>GAU
UUC=>UUU
NA=>NA
CCA=>CUA
UCU=>UUU
GCC=>GCU
UCC=>UUC
UCC=>UUC
UCC=>UUC
CGG=>UGG
CCG=>UCG
GUC=>GUU
CGG=>UGG
UCA=>UUA
UGA=>CGA
UCC=>UUC
UCA=>UUA
CUC=>CUU
NA=>NA
CUU=>UUU
CCC=>CUC
CCA=>UCA
GCG=>GUG
UUC=>UUU
CCA=>CUA
P=>S
P=>L
S=>F
H=>Y
T=>M
S=>F
S=>F
R=>W
A=>V
P=>L
F=>F
P=>S
NA=>NA
S=>L
H=>Y
R=>C
P=>L
S=>L
H=>Y
D=>D
F=>F
NA=>NA
P=>L
S=>F
A=>A
S=>F
S=>F
S=>F
R=>W
P=>S
V=>V
R=>W
S=>L
TERM=>R
S=>F
S=>L
L=>L
NA=>NA
L=>F
P=>L
P=>S
A=>V
F=>F
P=>L
Rhazya strictaMitochondrion36
C-to-U: 36
405818
405822
406049
406061
406250
406259
406322
406358
406397
406475
406522
406568
406844
406993
407212
407240
407296
407306
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCU=>UUU
CCG=>CUG
UCU=>UUU
UCC=>UUC
GUC=>GUU
CGU=>UGU
CCG=>CUG
CCA=>CUA
CCA=>UCA
UCC=>UUC
UCC=>UUC
UCU=>UUU
CAC=>UAC
UCU=>UUU
CCA=>CUA
CCA=>UCA
UCU=>UUU
CGG=>UGG
CCG=>CUG
CAC=>UAC
UCA=>UUA
UCA=>UUA
UCU=>UUU
CGG=>UGG
UCA=>UUA
UCC=>UUC
UCU=>UUU
UCA=>UUA
GUC=>GUU
UCU=>UUU
CCG=>CUG
UCA=>UUA
UCC=>UUC
UCC=>UUC
CGU=>UGU
UCA=>UUA
S=>F
P=>L
S=>F
S=>F
V=>V
R=>C
P=>L
P=>L
P=>S
S=>F
S=>F
S=>F
H=>Y
S=>F
P=>L
P=>S
S=>F
R=>W
P=>L
H=>Y
S=>L
S=>L
S=>F
R=>W
S=>L
S=>F
S=>F
S=>L
V=>V
S=>F
P=>L
S=>L
S=>F
S=>F
R=>C
S=>L
Solanum lycopersicumMitochondrion3
NA: 3
315388-316971CDS
CDS
CDS
+NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Solanum pennelliiMitochondrion2
NA: 2
8832-10415CDS
CDS
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)