CVTree A Parallel Alignment-free Phylogeny and Taxonomy Tool based on Composition Vectors of Genomes
Introduction
CVTree stands for Composition Vector Tree which is the implementation of an alignment-free algorithm to generate a dissimilarity matrix from a comparatively large collection of DNA or Amino Acid sequences, preferably whole-genome data, for phylogenetic studies. It had been successfully applied to study phylogeny and taxonomy of viruses, prokaryotes, and fungi based on the whole genomes, as well as chloroplasts, mitochondria, and metagenomes.
Publications
Credits
- Guanghong Zuo ghzuo@qq.com Investigator
T-Life Research Center, Department of Physics, Fudan University, China
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Summary
| Accession | BT007094 |
|---|---|
| Tool Type | Application |
| Category | Phylogenetic inference |
| Platforms | Linux/Unix, MAC OS X, Windows |
| Technologies | C++ |
| User Interface | Terminal Command Line |
| Input Data | FASTA |
| Latest Release | 3.0.1 (March 5, 2021) |
| Download Count | 1017 |
| Country/Region | China |
| Submitted By | Guanghong Zuo |
Fundings
the National Basic Research Program of Ministry of Science and Technology of China (973 Project Grant No. 2013CB834100) the National Natural Science Foundation of China (Grant No. 11474068)