atp1 - Plant Editosome Database - BIG Data Center

Summary

Gene: atp1
Function: ATP synthase
Species: 29
Editing Factors:12 (DYW2, EMP21, MEF37, MEF8, MREF2, NUWA, ORRM3, ORRM5, OTP87, OTP90, PGN, SlORRM4)
Editing Types:
C-to-U (215)
U-to-C (22)
Editing Events: 266 (C-to-U: 215   NA: 29   U-to-C: 22)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Anomodon attenuatusMitochondrion2
C-to-U: 2
81256
83936
CDS
CDS
+C-to-U
C-to-U
ACG=>AUG
CAA=>UAA
T=>M
Q=>TERM
Anomodon rugeliiMitochondrion2
C-to-U: 2
81335
84016
CDS
CDS
+C-to-U
C-to-U
ACG=>AUG
CAA=>UAA
T=>M
Q=>TERM
Arabidopsis thalianaMitochondrion12
C-to-U: 10
NA: 2
302166-303689
302206
302275
302398
302512
302580
NA
NA
NA
NA
CDS
NA
NA
NA
CDS
NA
NA
NA
+
-
C-to-U
C-to-U
C-to-U
C-to-U
NA
C-to-U
C-to-U
C-to-U
NA
C-to-U
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Asclepias syriacaMitochondrion2
NA: 2
216676-218199CDS
CDS
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Beta macrocarpaMitochondrion3
C-to-U: 3
253487
253610
253724
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
CCG=>CUG
CCA=>CUA
CCA=>CUA
P=>L
P=>L
P=>L
Beta vulgaris subsp. maritimaMitochondrion3
C-to-U: 3
253570
253693
253807
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
CCA=>CUA
CCA=>CUA
CCG=>CUG
P=>L
P=>L
P=>L
Beta vulgaris subsp. vulgarisMitochondrion3
C-to-U: 3
337697
337820
337934
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
CCG=>CUG
CCA=>CUA
CCA=>CUA
P=>L
P=>L
P=>L
Brachythecium rivulareMitochondrion1
C-to-U: 1
80982CDS+C-to-UACG=>AUGT=>M
Brassica napusMitochondrion10
C-to-U: 10
135699
135768
135891
136005
137168
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
CCA=>CUA
CCG=>CUG
CCA=>CUA
CCG=>CUG
CCC=>CCU
CCA=>CUA
CCC=>CCU
CCA=>CUA
S=>L
S=>L
P=>L
P=>L
P=>L
P=>L
P=>P
P=>L
P=>P
P=>L
Citrullus lanatusMitochondrion7
C-to-U: 7
112558
112633
112756
112870
113009
113538
113802
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
+
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCU=>UCU
CCG=>CUG
AUC=>AUY
UCA=>UUA
CCA=>CUA
CCA=>CUA
ACC=>ACY
P=>S
P=>L
I=>I
S=>L
P=>L
P=>L
T=>T
Climacium americanumMitochondrion1
C-to-U: 1
81770CDS+C-to-UACG=>AUGT=>M
Cucurbita pepoMitochondrion3
C-to-U: 3
416036
416175
416289
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
CCU=>UCU
UCA=>UUA
CCG=>CUG
P=>S
S=>L
P=>L
Cycas taitungensisMitochondrion2
C-to-U: 2
15476CDS
CDS
+C-to-U
C-to-U
ACG=>AUG
ACG=>AUG
T=>M
T=>M
Ginkgo bilobaMitochondrion7
C-to-U: 7
78512
78888
78946
78951
78956
78962
78968
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CGU=>UGU
UCG=>UUG
GUC=>GUU
CCG=>CUG
GGC=>GGU
UCA=>UUA
CCA=>CUA
R=>C
S=>L
V=>V
P=>L
G=>G
S=>L
P=>L
Hypnum imponensMitochondrion1
C-to-U: 1
81559CDS+C-to-UACG=>AUGT=>M
Lotus japonicusMitochondrion2
C-to-U: 2
194111CDS
CDS
-C-to-U
C-to-U
CCA=>CUA
CCA=>CUA
P=>L
P=>L
Millettia pinnataMitochondrion8
C-to-U: 8
29057
30511
54526
55980
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
+
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CUC=>CUU
CCA=>CUA
CCA=>CUA
CUC=>CUU
CUC=>CUU
CCA=>CUA
CCA=>CUA
CUC=>CUU
L=>L
P=>L
P=>L
L=>L
L=>L
P=>L
P=>L
L=>L
Nelumbo nuciferaMitochondrion14
C-to-U: 13
NA: 1
404531-406060
404562
404571
404646
404769
404799
404845
404883
404893
404946
404997
405022
405090
406046
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
-
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
NA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
CCC=>CUC
CGC=>UGC
CCC=>UCC
UCA=>UUA
CCC=>CCU
NA=>NA
CCA=>CUA
CCG=>CUG
UCG=>UUG
UCG=>UUG
CUU=>UUU
UCC=>UUC
UCA=>UUA
P=>L
P=>L
R=>C
P=>S
S=>L
P=>P
NA=>NA
P=>L
P=>L
S=>L
S=>L
L=>F
S=>F
S=>L
Nothoceros aenigmaticusMitochondrion16
C-to-U: 2
NA: 8
U-to-C: 6
61719-62210
65464-65494
67696-67909
70600-71404
70777
71026
71260
71403
NA
NA
CDS
CDS
NA
NA
CDS
CDS
CDS
CDS
NA
NA
CDS
CDS
NA
NA
+
-
U-to-C
U-to-C
NA
NA
C-to-U
C-to-U
NA
NA
NA
NA
U-to-C
U-to-C
NA
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Ophioglossum californicumMitochondrion20
C-to-U: 20
39717
39831
40071
40335
40564
40645
40823
40849
41141
41159
3'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
3'UTR
CDS
CDS
3'UTR
CDS
CDS
CDS
CDS
3'UTR
CDS
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
UCA=>UUA
CCU=>CUU
GUC=>GUU
AUC=>AUU
GAC=>GAU
UCA=>UUA
AUC=>AUU
UCA=>UUA
NA=>NA
CCA=>UCA
GAC=>GAU
NA=>NA
CCU=>CUU
UCA=>UUA
CCA=>UCA
CCU=>CUU
NA=>NA
GUC=>GUU
CCU=>CUU
NA=>NA
S=>L
P=>L
V=>V
I=>I
D=>D
S=>L
I=>I
S=>L
NA=>NA
P=>S
D=>D
NA=>NA
P=>L
S=>L
P=>S
P=>L
NA=>NA
V=>V
P=>L
Oryza sativa Japonica GroupMitochondrion5
C-to-U: 5
352408
353556
353669
353868
353877
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CCC=>UCC
UCU=>UUU
CUC=>CUU
CCU=>CUU
S=>L
P=>S
S=>F
L=>L
P=>L
Phaeoceros laevisMitochondrion15
C-to-U: 1
NA: 4
U-to-C: 10
101596-101626
103888-104101
106558-107362
106735
106804
106870
106873
106984
107218
107361
97309-97800
97398
97692
97710
97761
NA
NA
CDS
NA
CDS
NA
NA
NA
CDS
NA
NA
NA
NA
CDS
NA
+
-
U-to-C
U-to-C
NA
C-to-U
NA
U-to-C
U-to-C
U-to-C
NA
U-to-C
U-to-C
U-to-C
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Phoenix dactyliferaMitochondrion13
C-to-U: 13
292432
292856
293157
293225
293250
293354
293364
293448
293478
293601
293617
293676
293685
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CCC=>UCC
CCA=>CUA
ACC=>ACU
CCC=>CUC
CGC=>UGC
UCG=>UUG
CCC=>CCU
CCC=>CUC
UCG=>UUG
UCU=>UUU
CCA=>UCA
CCA=>CUA
S=>L
P=>S
P=>L
T=>T
P=>L
R=>C
S=>L
P=>P
P=>L
S=>L
S=>F
P=>S
P=>L
Psilotum nudumMitochondrion14
C-to-U: 14
201961
201985
202136
202174
202194
202219
202328
202764
202862
202928
203099
203120
203502
203661
CDS
5'UTR
CDS
5'UTR
CDS
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
5'UTR
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCG=>UUG
NA=>NA
UCG=>UUG
NA=>NA
CCC=>CUC
CUA=>UUA
CCC=>CCU
NA=>NA
UCC=>UUC
AUC=>AUU
UUC=>UUU
UUC=>UUU
NA=>NA
CCG=>CUG
S=>L
NA=>NA
S=>L
NA=>NA
P=>L
L=>L
P=>P
NA=>NA
S=>F
I=>I
F=>F
F=>F
NA=>NA
P=>L
Ptychomnion cygnisetumMitochondrion2
C-to-U: 2
80512
83215
CDS
CDS
+C-to-U
C-to-U
ACG=>AUG
CAA=>UAA
T=>M
Q=>TERM
Rhazya strictaMitochondrion10
C-to-U: 10
433539
433678
433792
433915
433990
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
CCC=>UCC
CCC=>UCC
CCG=>CUG
CCG=>CUG
CCA=>CUA
CCA=>CUA
UCA=>UUA
UCA=>UUA
CCA=>CUA
P=>L
P=>S
P=>S
P=>L
P=>L
P=>L
P=>L
S=>L
S=>L
P=>L
Sanionia uncinataMitochondrion2
C-to-U: 2
81228CDS
CDS
+C-to-U
C-to-U
ACG=>AUG
ACG=>AUG
T=>M
T=>M
Sphagnum palustreMitochondrion2
C-to-U: 2
108647
113109
CDS
CDS
+C-to-U
C-to-U
CAA=>UAA
ACG=>AUG
Q=>TERM
T=>M
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)