Beta macrocarpa - Plant Editosome Database - BIG Data Center

Summary

Gene Editing Events Genomic Position Region Strand RNA Type Codons Amino Acids
atp13253487
253610
253724
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
CCA=>CUA
CCG=>CUG
CCA=>CUA
P=>L
P=>L
P=>L
atp6125032
4688
4484
4441
4621
4430
5200
4747
5111
4886
4685
4663
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CCU=>UCU
CAU=>UAU
ACA=>AUA
UCA=>UUA
CAA=>UAA
ACG=>AUG
UCA=>UUA
CCA=>UCA
CGU=>UGU
CAU=>UAU
UCA=>UUA
S=>L
P=>S
H=>Y
T=>I
S=>L
Q=>TERM
T=>M
S=>L
P=>S
R=>C
H=>Y
S=>L
atp82215191
215208
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
UCA=>UUA
UUC=>UUU
S=>L
F=>F
atp95320394
320202
320405
320232
320278
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
CGA=>UGA
UCA=>UUA
AUC=>AUU
S=>L
S=>L
R=>TERM
S=>L
I=>I
ccmB3075597
76015
75662
75702
75989
75618
76089
75573
76098
75655
75657
76141
76009
75684
76041
76130
75990
75883
75763
75988
75997
75675
76020
75600
75615
75865
75745
75986
75666
76021
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCG=>UUG
CGG=>UGG
ACC=>ACU
UCG=>UUG
CCC=>CCU
UCA=>UUA
UCG=>UUG
UCG=>UUG
CCA=>CUA
CGU=>UGU
UCU=>UUU
CAU=>UAU
CCU=>UCU
UCA=>UUA
UCA=>UUA
AUC=>AUU
CCC=>CUC
CGG=>UGG
CUG=>UUG
CCC=>UCC
CCU=>UCU
UCA=>UUA
CCG=>CUG
UCU=>UUU
UCG=>UUG
CGU=>UGU
CGU=>UGU
CCC=>CCU
UCA=>UUA
CCG=>UCG
S=>L
R=>W
T=>T
S=>L
P=>P
S=>L
S=>L
S=>L
P=>L
R=>C
S=>F
H=>Y
P=>S
S=>L
S=>L
I=>I
P=>L
R=>W
L=>L
P=>S
P=>S
S=>L
P=>L
S=>F
S=>L
R=>C
R=>C
P=>P
S=>L
P=>S
ccmFC13355725
355757
355842
353786
353712
355489
355570
355758
355474
355830
353807
355705
355729
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
-
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCC=>UCU
UCC=>UUC
UCG=>UUG
CGG=>UGG
CGU=>UGU
CGU=>UGU
UCC=>UUC
CGU=>UGU
CCU=>CUU
CCA=>CUA
CUA=>UUA
CCU=>UCU
S=>L
S=>S
S=>F
S=>L
R=>W
R=>C
R=>C
S=>F
R=>C
P=>L
P=>L
L=>L
P=>S
ccmFN23358884
359355
358931
358368
359487
358835
358194
358922
358290
359375
359540
358850
358323
358257
359185
358239
359079
359382
358308
358862
358340
358125
359600
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CGU=>UGU
CUU=>UUU
CCU=>CUU
CGG=>UGG
CCU=>UCU
UCA=>UUA
CUU=>UUU
UCA=>UUA
CGG=>UGG
CCA=>CUA
CCU=>CUU
CCA=>CUA
CAU=>UAU
CGG=>UGG
UUC=>UUU
CGU=>UGU
CUU=>UUU
CGG=>UGG
CGG=>UGG
UCA=>UUA
CCA=>CUA
CCC=>UCC
CCG=>CUG
R=>C
L=>F
P=>L
R=>W
P=>S
S=>L
L=>F
S=>L
R=>W
P=>L
P=>L
P=>L
H=>Y
R=>W
F=>F
R=>C
L=>F
R=>W
R=>W
S=>L
P=>L
P=>S
P=>L
cob13368647
368558
367812
368064
368614
368293
368930
368404
368164
368674
367891
368686
368048
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
-
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CAU=>UAU
UAC=>UAU
ACG=>AUG
CCC=>CUC
CGG=>UGG
CUU=>UUU
CCC=>CCU
CAU=>UAU
CCC=>UCC
CAC=>UAC
CCU=>UCU
CUC=>UUC
CUC=>CUU
H=>Y
Y=>Y
T=>M
P=>L
R=>W
L=>F
P=>P
H=>Y
P=>S
H=>Y
P=>S
L=>F
L=>L
cox2936494
38240
36586
36471
38539
36712
38378
38273
38258
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
ACG=>AUG
CGG=>UGG
CUC=>CUU
CGG=>UGG
CGG=>UGG
UCA=>UUA
UCA=>UUA
CCA=>CUA
S=>L
T=>M
R=>W
L=>L
R=>W
R=>W
S=>L
S=>L
P=>L
cox34213513
213469
213395
213647
CDS
CDS
CDS
CDS
-
-
-
-
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
AUC=>AUU
UCU=>UUU
CGG=>UGG
CUA=>UUA
I=>I
S=>F
R=>W
L=>L
mat-r947091
45683
47036
47077
45383
45550
47144
45770
47057
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UAC=>UAU
CCA=>CUA
UCC=>UUC
CGC=>UGC
CCC=>CUC
CCA=>UCA
CCA=>CUA
UCG=>UUG
CCU=>CUU
Y=>Y
P=>L
S=>F
R=>C
P=>L
P=>S
P=>L
S=>L
P=>L
nad12044650
287555
290416
72192
287562
290323
72028
287599
290373
72186
287598
71998
290275
287552
286076
290415
72171
290110
72147
72183
CDS
CDS
CDS
NA
CDS
CDS
NA
CDS
CDS
NA
CDS
NA
CDS
CDS
CDS
CDS
NA
CDS
NA
NA
+
+
+
-
+
+
-
+
+
-
+
-
+
+
+
+
-
+
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCU=>UUU
CGU=>UGU
CCG=>CUG
NA=>NA
UCG=>UUG
UCC=>UUC
NA=>NA
UCC=>UCU
CGG=>UGG
NA=>NA
UCC=>UUC
NA=>NA
UCG=>UUG
CCU=>UCU
CCU=>UCU
CCG=>UCG
NA=>NA
ACG=>AUG
NA=>NA
NA=>NA
S=>F
R=>C
P=>L
NA=>NA
S=>L
S=>F
NA=>NA
S=>S
R=>W
NA=>NA
S=>F
NA=>NA
S=>L
P=>S
P=>S
P=>S
NA=>NA
T=>M
NA=>NA
NA=>NA
nad22343294
317611
43256
43123
315678
315928
315744
315962
315504
41922
317606
43267
315774
315674
43261
43328
315796
317612
43397
315843
317603
313312
315644
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CAU=>UAU
CCA=>UCA
UCA=>UUA
CUU=>UUU
ACU=>AUU
UUC=>UUU
UCA=>UUA
CCA=>UCA
UCU=>UUU
UCC=>UUC
UCC=>UUC
CGC=>UGC
UCA=>UUA
CGU=>UGU
CCU=>UCU
CCU=>CUU
GUC=>GUU
CCA=>CUA
UCG=>UUG
UCG=>UUG
UCA=>UUA
UCC=>UUC
CAU=>UAU
H=>Y
P=>S
S=>L
L=>F
T=>I
F=>F
S=>L
P=>S
S=>F
S=>F
S=>F
R=>C
S=>L
R=>C
P=>S
P=>L
V=>V
P=>L
S=>L
S=>L
S=>L
S=>F
H=>Y
nad312179230
179281
179095
179364
179076
179223
179290
179262
179359
179077
179054
179020
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCG=>CUG
CCG=>CUG
CCA=>CUA
CGG=>UGG
CCA=>UCA
CUU=>UUU
UCU=>UUU
CCU=>UCU
UCG=>UUG
CCA=>CUA
AUC=>AUU
UCA=>UUA
P=>L
P=>L
P=>L
R=>W
P=>S
L=>F
S=>F
P=>S
S=>L
P=>L
I=>I
S=>L
nad419200877
195911
198803
201087
200885
200816
200804
201056
200820
201095
198458
198712
201224
195906
200992
200891
201146
195927
201179
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CGU=>UGU
CCG=>CUG
CCG=>CUG
CGG=>UGG
UCU=>UUU
UCC=>UUC
CCA=>CUA
UCU=>UUU
CUU=>UUU
CCU=>CUU
CCA=>CUA
UAC=>UAU
UCU=>UUU
CGC=>UGC
GAC=>GAU
ACA=>AUA
UCG=>UUG
CAC=>UAC
ACU=>AUU
R=>C
P=>L
P=>L
R=>W
S=>F
S=>F
P=>L
S=>F
L=>F
P=>L
P=>L
Y=>Y
S=>F
R=>C
D=>D
T=>I
S=>L
H=>Y
T=>I
nad4L10337261
337213
337168
337276
337221
337297
337447
337345
337363
337324
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
ACG=>AUG
UCA=>UUA
CGG=>UGG
UCG=>UUG
UCU=>UUU
UCA=>UUA
CCA=>CUA
UCG=>UUG
S=>L
S=>L
T=>M
S=>L
R=>W
S=>L
S=>F
S=>L
P=>L
S=>L
nad51791584
92641
92875
236849
92992
92625
92980
93102
92665
235559
236909
235561
92815
236879
235582
235519
92509
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
-
+
+
+
+
+
-
-
-
+
-
-
-
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCG=>CUG
CCA=>CUA
GCC=>GUC
CCC=>CUC
UCA=>UUA
CUU=>UUU
UCG=>UUG
CCA=>UCA
UCU=>UUU
CGU=>UGU
ACC=>AUC
UCU=>UUU
UCG=>UUG
UCA=>UUA
UCA=>UUA
UCG=>UUG
CCG=>CUG
P=>L
P=>L
A=>V
P=>L
S=>L
L=>F
S=>L
P=>S
S=>F
R=>C
T=>I
S=>F
S=>L
S=>L
S=>L
S=>L
P=>L
nad611382185
382184
382198
382664
382256
382189
382121
382286
382241
382190
382183
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCC=>CCU
CCC=>CUC
CGC=>UGC
UCU=>UUU
CCA=>CUA
CCA=>UCA
CCG=>CUG
UCA=>UUA
UCC=>UUC
CCA=>CUA
CCC=>UCC
P=>P
P=>L
R=>C
S=>F
P=>L
P=>S
P=>L
S=>L
S=>F
P=>L
P=>S
nad72020217
23316
23446
19873
23400
23422
19854
23509
20071
17792
23287
19983
19882
19789
23467
21361
19782
23269
20116
23431
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>UCA
CCU=>UCU
UCU=>UUU
UCA=>UUA
CGU=>UGU
UCU=>UUU
CGU=>UGU
UCU=>UUU
UCC=>UUC
UCA=>UUA
CCU=>CUU
CCG=>UCG
UCA=>UUA
UCA=>UUA
CCA=>CUA
CGC=>UGC
CAU=>UAU
UCA=>UUA
UCA=>UUA
UCA=>UUA
P=>S
P=>S
S=>F
S=>L
R=>C
S=>F
R=>C
S=>F
S=>F
S=>L
P=>L
P=>S
S=>L
S=>L
P=>L
R=>C
H=>Y
S=>L
S=>L
S=>L
nad95162845
162816
162630
162609
162885
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CGG=>UGG
CCG=>CUG
CCA=>CUA
UCU=>UUU
UCC=>UUC
R=>W
P=>L
P=>L
S=>F
S=>F
Novel11-385220NA+Unanotated TranscriptNANA=>NANA=>NA
rpl55370491
370950
370840
370962
370945
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCG=>CUG
CCG=>CUG
CCG=>UCG
CCG=>CUG
CAC=>UAC
P=>L
P=>L
P=>S
P=>L
H=>Y
rps126179616
179704
179689
179491
179520
179524
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CAC=>UAC
UCC=>UUC
UCG=>UUG
UCG=>UUG
CGC=>UGC
CCG=>CUG
H=>Y
S=>F
S=>L
S=>L
R=>C
P=>L
rps132285415
285593
CDS
CDS
+
+
mRNA
mRNA
C-to-U
C-to-U
UCA=>UUA
AUC=>AUU
S=>L
I=>I
rps35187484
188135
188162
187283
187802
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCG=>UUG
CCG=>CUG
CCG=>CUG
UCA=>UUA
CCA=>CUA
S=>L
P=>L
P=>L
S=>L
P=>L
rps411381021
381390
381450
380672
380588
380805
380732
381007
381455
381441
380874
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCU=>UUU
CCU=>CUU
CCG=>UCG
CGG=>UGG
CCA=>CUA
CAU=>UAU
UUC=>UUU
CGG=>UGG
CCA=>CUA
CCG=>CUG
S=>L
S=>F
P=>L
P=>S
R=>W
P=>L
H=>Y
F=>F
R=>W
P=>L
P=>L
rps7333188
33404
33498
NA
NA
NA
+
+
+
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)