Total experiments Released experiments Confidential experiments
27979 10399 17580

Total runs Released runs Confidential runs
30655 12109 18546
Sample type Experiments Runs
Plant 5750 6671
Human 1959 2202
Animals 1309 1852
Microbe 593 595
Pathogen 756 756
Virus 32 33
Organism Experiments Runs
Homo sapiens 2001 2234
Fagopyrum tataricum 1688 1688
Zea mays 1445 1468
Glycine max 809 809
Oryza sativa 751 1386
Bos taurus 659 660
Triticum urartu 624 624
Mus musculus 419 551
Rattus norvegicus 148 220
synthetic metagenome 144 144
Anas platyrhynchos 130 130
Canis sp. 127 127
Ipomoea batatas 118 120
human gut metagenome 117 117
metagenome 100 99
Escherichia coli 76 76
gut metagenome 73 73
Nanorana parkeri 62 140
Chlamydomonas reinhardtii 52 52
Saccharina japonica 48 48
Sus scrofa 46 54
Drosophila melanogaster 43 43
Macaca mulatta 43 126
Saccharomyces cerevisiae 36 36
Rattus 36 36
Arabidopsis thaliana 36 42
Litopenaeus vannamei 30 30
Influenza A virus 29 30
Plasmid vector pSP189 28 28
Ailuropoda melanoleuca 27 27
Enterobacteria phage phiX174 sensu lato 23 23
Solanum lycopersicum 20 55
Microbiota 20 20
Triticum aestivum 20 149
Canis lupus 19 19
Bacillus licheniformis 19 19
Kappaphycus alvarezii 18 18
Mus 17 16
Hevea brasiliensis 15 15
Prunus mume 15 14
Eospalax baileyi 14 22
Scophthalmus maximus 13 42
Danio rerio 12 24
Rosa odorata 12 12
Nicotiana tabacum 12 12
Ovis ammon 11 11
Bos grunniens 9 9
Rosa chinensis 9 9
Rangifer tarandus 9 18
Mycobacterium tuberculosis 8 8
Rattus rattus 8 12
Elaphurus davidianus 8 25
Cucumis sativus 8 12
Siraitia grosvenorii 7 59
Ochotona curzoniae 7 13
Oreochromis niloticus 7 6
Valsa mali 6 6
Lilium 6 18
Macaca fascicularis 6 6
Cistanche deserticola 6 6
Drosophila 6 24
Cocos nucifera 5 15
Gallus gallus 5 4
Oryza longistaminata 4 4
Populus trichocarpa 4 4
Pan troglodytes 4 72
Tupaia belangeri 4 4
Strongylocentrotus intermedius 4 4
Actinidia deliciosa 4 4
Arctium lappa 3 3
Dendrobium huoshanense 3 9
Acinetobacter baumannii 3 3
Klebsiella pneumoniae 3 3
Pseudomonas aeruginosa 3 3
Anser anser 3 3
Tadorna ferruginea 3 3
Anemone flaccida 2 2
Ipomoea trifida 2 4
Mycobacterium bovis 2 2
Umbilicaria americana 2 3
Corydoras panda 2 1
Prunus persica 1 4
Mycobacterium microti 1 1
Mycobacterium africanum 1 1
Corylus mandshurica 1 1
Nanorana pleskei 1 1
Mus musculus cytomegalovirus 2 1 2
Corylus yunnanensis 1 1
Corylus heterophylla var. sutchuenensis 1 1
human blood metagenome 1 10
Corylus ferox 1 1
Mus sp. 1 1
Triticum dicoccoides 1 4
Corylus ferox var. thibetica 1 1
Lactobacillus plantarum 1 1
Corylus americana 1 1
Ixodes persulcatus 1 3
Eonycteris spelaea 1 1
Rhinolophus sinicus 1 1
Myotis ricketti 1 1

Platform Experiments Runs
Illumina HiSeq 2500 5551 6432
Illumina HiSeq 2000 3275 3676
Illumina HiSeq X-10 421 549
Illumina MiSeq 381 381
Illumina HiSeq 4000 248 365
Complete Genomics 118 120
Illumina HiSeq 3000 81 97
Illumina HiScanSQ 72 72
AB SOLiD System 3.0 43 43
PacBio RS 42 149
Illumina Genome Analyzer II 29 30
Illumina Genome Analyzer 29 46
BGISEQ-500 20 20
454 GS 16 16
Ion Torrent PGM 16 22
Illumina HiSeq 1500 15 15
Illumina Nextseq 500 12 12
AB 5500xl Genetic Analyzer 7 7
AB 3730xL Genetic Analyzer 5 5
454 GS 20 5 26
Illumina Genome Analyzer IIx 5 6
454 GS FLX Titanium 4 14
AB SOLiD 3 Plus System 3 3
AB 3730 Genetic Analyzer 1 3

  Submitters: 306   /   Organizations: 93


ID Organization GSAs Experiments Runs
1 Beijing Institute of Genomics, Chinese Academy of Sciences 209 3932 4723
2 Huazhong University of Science and Technology 67 352 280
3 Institute of Genetics and Developmental Biology, Chinese Academy of Sciences 53 11026 11677
4 Kunming Institute of Zoology, Chinese Academy of Sciences 53 3115 3417
5 China Agricultural University 37 1079 1093
6 Institute of Animal Sciences, Chinese Academy of Agricultural Sciences 21 150 210
7 Beijing Forestry University 18 501 490
8 Institute of Zoology, Chinese Academy of Sciences 13 158 188
9 Institute of Plant Physiology & Ecology, Chinese Academy of Sciences 12 147 153
10 Huazhong Agricultural University 8 237 252
11 Institute of Crop Sciences, Chinese Academy of Agricultural Sciences 8 20 22
12 Sun Yat-sen University 8 19 47
13 Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences 7 1102 1102
14 Fudan University 7 590 686
15 Northwest A&F University 7 125 257
16 Institute of Botany, Chinese Academy of Sciences 6 775 812
17 Tsinghua University 6 665 665
18 Jiangsu Normal University 5 349 353
19 Peking University 5 125 124
20 CAS-MPG Partner Institute for Computational Biology, Chinese Academy of Sciences 5 94 295
21 Central South University 5 91 91
22 Institute of Hydrobiology, Chinese Academy of Sciences 5 25 43
23 Forest & Fruit Tree Research Institute, Shanghai Academy of Agricultural Sciences 5 6 6
24 Tianjin University 4 24 24
25 Northwestern Polytechnical University 4 18 43
26 Institute of Subtropical Agriculture, Chinese Academy of Sciences 3 595 598
27 Sichuan University 3 102 102
28 Yangzhou University 3 78 81
29 Yunnan University 3 39 39
30 Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College 3 24 36
31 Institute of Modern Physics, Chinese Academy of Sciences 3 21 21
32 University of Science and Technology of China 3 17 18
33 University of Chinese Academy of Sciences 3 10 30
34 Center of Systems Medicine, Chinese Academy of Medical Sciences, Suzhou Institute of Systems Medicine 3 10 10
35 Jiangxi Agricultural University 3 9 24
36 Wuhan University 3 4 4
37 Southwest Forestry University 3 3 2
38 Nanjing Medical University 2 151 151
39 Zhejiang University 2 32 31
40 China-Japan Friendship Hospital 2 29 30
41 Rubber Research Institute, Chinese Academy of Tropical Agricultural Sciences 2 15 15
42 Beijing Cancer Hospital 2 13 26
43 Fuwai Hospital, Chinese Academy of Medical Sciences 2 10 9
44 Institute of Hematology and Blood Diseases Hospital, Chinese Academy of Medical Sciences 2 8 8
45 Ocean University of China 2 5 24
46 Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Sciences 2 4 10
47 Nanjing Forestry University 2 4 9
48 Hangzhou Normal University 2 4 4
49 Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College 2 4 4
50 Tianjin Medical University Cancer Institute and Hospital 2 1 6
51 Shenzhen University 2 1 5
52 Henan Agricultural University 2 1 2
53 Institute of Biochemistry and Cell Biology, SIBS, CAS 2 1 1
54 National Key Laboratory of Crop Genetic Improvement 1 1428 1451
55 Beijing Anzhen Hospital, Capital Medical University 1 196 196
56 Guizhou Tea Research Institute, Guizhou Academy of Agricultural Sciences 1 154 154
57 Beijing Institutes of Life Science, Chinese Academy of Sciences 1 132 132
58 Guangdong Ocean University 1 30 30
59 Sichuan Provincial People’s Hospital and Affiliated Hospital of University of Electronic Science and Technology 1 20 30
60 Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences 1 19 57
61 East China Normal University 1 18 216
62 Northeast Agricultural University 1 15 45
63 Institute of Dermatology and Hospital for Skin Diseases, Chinese Academy of Medical Sciences & Peking Union Medical Collage 1 15 15
64 The University of Hong Kong 1 13 13
65 Institute of Medical Biology, Chinese Academy of Medical Sciences 1 12 12
66 Non-timber Forest Research and Development Center, Chinese Academy of Forestry 1 12 12
67 Lanzhou University 1 11 11
68 Institute of Special Animal and Plant Science, Chinese Academy of Agricultural Sciences 1 10 10
69 Institute of Vegetables and Flowers, Shandong Academy of Agricultural Sciences 1 8 16
70 Institute Pasteur of Shanghai, Chinese Academy of Sciences 1 8 8
71 Shanghai Jiaotong University School of Medicine 1 6 11
72 Luoyang Normal University 1 6 6
73 Chongqing University 1 6 6
74 Northeast Forestry University 1 6 6
75 Tea Research Institute, Chinese Academy of Agricultural Sciences 1 6 6
76 The people's hospital of Longhua 1 6 6
77 Nanjing University of Aeronautics and Astronautics 1 6 6
78 Beijing Academy of Agriculture and Forestry Sciences 1 6 6
79 LemonData Biotech co., LTD 1 6 6
80 Zhejiang Institute of Microbiology 1 4 4
81 Dalian Ocean University 1 4 4
82 Nanjing Agriculture University 1 3 20
83 Jiaying University 1 3 9
84 Tongji University 1 3 6
85 Liaoning university of Traditional Chinese medicine 1 3 3
86 None 1 3 2
87 Huaihai Institute of Technology 1 2 2
88 Ningxia Medical University 1 2 2
89 Hubei University of Chinese Medicine 1 2 2
90 Southwest Medical University 1 1 1
91 Southwest University 1 1 1
92 Hainan University 1 1 1
93 Shanxi Medical University 1 1 1

  Top 20 downloads

Accession File size(GB) Download size (GB) BioProject Release date
CRA000112 5,617 48,953 PRJCA000246 2016-09-09
CRA000108 3,158 33,362 PRJCA000241 2017-07-13
CRA000345 1,840 4,348 PRJCA000251 2017-12-08
CRA000026 258 3,746 PRJCA000131 2016-12-31
CRA000114 1,594 3,376 PRJCA000248 2017-12-12
CRA000297 364 3,355 PRJCA000484 2018-03-09
CRA000083 6,076 2,343 PRJCA000205 2017-10-09
CRA000332 554 1,831 PRJCA000476 2017-12-17
CRA000096 1,612 1,612 PRJCA000224 2017-11-22
CRA000004 341 1,599 PRJCA000091 2016-01-01
CRA000651 861 1,528 PRJCA000647 2017-12-27
CRA000126 277 1,426 PRJCA000269 2016-11-04
CRA000173 616 1,233 PRJCA000333 2017-02-13
CRA000626 3,669 1,180 PRJCA000610 2018-05-29
CRA000539 1,053 702 PRJCA000600 2018-06-07
CRA000977 553 553 PRJCA000369 2018-06-13
CRA000017 545 519 PRJCA000114 2016-09-09
CRA000258 375 470 PRJCA000446 2017-05-15
CRA000129 395 396 PRJCA000268 2016-11-04
CRA000161 107 323 PRJCA000313 2017-05-08

  Total journals: 41   /   Total articles: 58

ID Journal title Article title Publish date GSA accession BioProject accession
1 Cell 3D Chromatin Structures of Mature Gametes and Structural Reprogramming during Mammalian Embryogenesis. 2017-07 CRA000108 PRJCA000241
1 Cell Chromatin Accessibility Landscape in Human Early Embryos and Its Association with Evolution 2018-03 CRA000297 PRJCA000484
1 Nature m6A modulates haematopoietic stem and progenitor cell specification 2017-09 CRA000275 PRJCA000469
1 Nature Genome sequence of the progenitor of wheat A subgenome Triticum urartu 2018-05 CRA000205 CRA000205
1 Proceedings of the National Academy of Sciences of the United States of America Extremely high genetic diversity in a single tumor points to prevalence of non-Darwinian cell evolution 2015-11 CRA000004 PRJCA000091
1 Proceedings of the National Academy of Sciences of the United States of America Integrated analysis of phenome, genome, and transcriptome of hybrid rice uncovered multiple heterosis-related loci for yield increase 2016-10 CRA000026 PRJCA000131
1 Proceedings of the National Academy of Sciences of the United States of America Mediator subunit MED25 links the jasmonate receptor to transcriptionally active chromatin 2017-10 CRA000278 PRJCA000475
1 Nature Communications Loss of Asxl2 leads to myeloid malignancies in mice 2017-06 CRA000122 PRJCA000259
1 Nature Communications Precise control of SCRaMbLE in synthetic haploid and diploid yeast 2018-05 CRA000723 PRJCA000730
1 Cell research Loss of 5-hydroxymethylcytosine is linked to gene body hypermethylation in kidney cancer 2016-01 CRA000010 PRJCA000102
1 Cell research 5-methylcytosine promotes mRNA export — NSUN2 as the methyltransferase and ALYREF as an m5C reader 2017-05 CRA000162 PRJCA000315
1 Cell research Integrated genomic analysis identifies deregulated JAK/STAT-MYC-biosynthesis axis in aggressive NK-cell leukemia. 2017-11 CRA000096 PRJCA000224
1 Genome Biology Differentiated demographic histories and local adaptations between Sherpas and Tibetans 2017-06 CRA000112 PRJCA000246
1 Genome Biology RNA m6A methylation participates in regulation of postnatal development of the mouse cerebellum 2018-05 CRA000472 PRJCA000543
1 American journal of human genetics Ancestral Origins and Genetic History of Tibetan Highlanders 2016-09 CRA000112 PRJCA000246
1 cell stem cell Zika Virus Disrupts Neural Progenitor Development and Leads to Microcephaly in Mice 2016-11 CRA000128 PRJCA000267
1 Current Biology Convergent Evolution of Rumen Microbiomes in High-Altitude Mammals 2016-07 CRA000017
CRA000018
CRA000019
PRJCA000114
PRJCA000115
PRJCA000116
1 Front Cell Infect Microbiol The Bioinformatics Analysis of Comparative Genomics of Mycobacterium tuberculosis Complex (MTBC) Provides Insight into Dissimilarities between Intraspecific Groups Differing in Host Association, Virulence, and Epitope Diversity 2017-03 CRA000155 PRJCA000307
1 Genome Research LTR-mediated retroposition as a mechanism of RNA-based duplication in metazoans 2016-12 CRA000015
CRA000020
CRA000138
CRA000139
PRJCA000123
PRJCA000124
PRJCA000279
PRJCA000280
1 Journal of Cell Science ESCRT-0 complex modulates Rbf-mutant cell survival by regulating Rhomboid endosomal trafficking and EGFR signaling 2016-05 CRA000094 PRJCA000222
1 Molecular biology and evolution Down-Regulation of EPAS1 Transcription and Genetic Adaptation of Tibetans to High-Altitude Hypoxia 2017-04 CRA000129
CRA000126
PRJCA000268
PRJCA000269
1 Scientific Reports A Comprehensive Mouse Transcriptomic BodyMap by RNA-seq 2017-06 CRA000240 PRJCA000427
1 Scientific Reports Fish gut-liver immunity during homeostasis or inflammation revealed by integrative transcriptome and proteome studies 2016-11 CRA000085 PRJCA000207
1 Stem Cell Reports Loss of Asxl1 Alters Self-Renewal and Cell Fate of Bone Marrow Stromal Cells, Leading to Bohring-Opitz-like Syndrome in Mice 2016-06 CRA000104 PRJCA000236
1 Molecular plant The Tartary Buckwheat Genome Provides Insights into Rutin Biosynthesis and Abiotic Stress Tolerance. 2017-09 CRA000225
CRA000226
CRA000227
CRA000228
CRA000229
CRA000230
PRJCA000400
PRJCA000401
PRJCA000402
PRJCA000403
PRJCA000404
PRJCA000407
1 The Plant Cell MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. 2017-08 CRA000221
CRA000222
CRA000249
PRJCA000395
PRJCA000396
PRJCA000440
1 Genes Genome-Wide Identification and Characterization of Salinity Stress-Responsive miRNAs in Wild Emmer Wheat (Triticum turgidum ssp. dicoccoides). 2017-06 CRA000238 PRJCA000426
1 Genomics Proteomics Bioinformatics Ribosome Profiling Reveals Genome-wide Cellular Translational Regulation upon Heat Stress in Escherichia coli. 2017-10 CRA000347 PRJCA000608
1 Front Cell Infect Microbiol Splenic microRNA Expression Profiles and Integration Analyses Involved in Host Responses to Salmonella enteritidis Infection in Chickens. 2017-08 CRA000315 PRJCA000485
1 Journal of Human Genetics Phylogeny of Y-chromosome haplogroup C3b-F1756, an important paternal lineage in Altaic-speaking populations. 2017-10
1 GigaScience Draft genome of the Marco Polo Sheep (Ovis ammon polii). 2017-12 CRA000260 PRJCA000449
1 Molecular genetics and genomics Whole sequence analysis indicates a recent southern origin of Mongolian Y-chromosome C2c1a1a1-M407 2017-12 CRA000194 PRJCA000359
1 Schizophrenia Research Analysis of gut microbiota diversity and auxiliary diagnosis as a biomarker in patients with schizophrenia: A cross-sectional study 2018-01 CRA000653 PRJCA000673
1 European Journal of Human Genetics Whole-sequence analysis indicates that the Y chromosome C2*-Star Cluster traces back to ordinary Mongols, rather than Genghis Khan 2018-01
1 Molecular biology and evolution Out of Southern East Asia of the Brown Rat Revealed by Large-Scale Genome Sequencing 2018-01
1 PLoS Pathog A role for small RNA in regulating innate immunity during plant growth 2018-01 CRA000618 PRJCA000650
1 Frontiers in Plant Science Constitutive Expression of miR408 Improves Biomass and Seed Yield in Arabidopsis 2018-01 CRA000553 PRJCA000613
1 Cell death and differentiation TMCO1 is essential for ovarian follicle development by regulating ER Ca2+ store of granulosa cells 2018-01 CRA000296 PRJCA000482
1 Journal of Human Genetics The uncertainty of population relationship and divergence time inferred by the multiple sequentially Markovian coalescent model. 2018-03 CRA000539 PRJCA000600
1 Zoological research Complete mitochondrial genome of the Thai Red Junglefowl (Gallus gallus) and phylogenetic analysis. 2018-03 CRA000143 PRJCA000287
1 Journal of molecular cell biology MeCP2 deficiency promotes cell reprogramming by stimulating IGF1/AKT/mTOR signaling and activating ribosomal protein-mediated cell cycle gene translation. 2018-03
1 bioRxiv Draft genome of the Reindeer (Rangifer tarandus) 2017-06 CRA000262 PRJCA000451
1 bioRxiv DNA local structure decreases mutation rates 2018-04 CRA000570 PRJCA000622
1 Frontiers in microbiology Tachyplesin Causes Membrane Instability That Kills Multidrug-Resistant Bacteria by Inhibiting the 3-Ketoacyl Carrier Protein Reductase FabG. 2018-05 CRA000801 PRJCA000788
1 BMC Genomics Direct measurement of pervasive weak repression by microRNAs and their role at the network level 2018-05 CRA000921 PRJCA000381
1 PLoS One Complete Sequence and Analysis of Coconut Palm (Cocos nucifera) Mitochondrial Genome 2018-05 CRA000123 PRJCA000261
1 Industrial Crops and Products Identification and characterization of long non-coding RNAs involved in the formation and development of poplar adventitious roots 2018-04 CRA000744 PRJCA000745
1 Proceedings. Biological sciences Seasonal variation in nutrient utilization shapes gut microbiome structure and function in wild giant pandas 2017-09 CRA000202 PRJCA000366
1 BMC Genomics Global transcriptome analysis of Huperzia serrata and identification of critical genes involved in the biosynthesis of huperzine A 2017-03 CRA000188 PRJCA000351
1 BMC Genomics High-sensitivity HLA typing by Saturated Tiling Capture Sequencing (STC-Seq) 2018-01 CRA000645 PRJCA000665
1 PeerJ Preprints Transcriptome analysis of Valsa mali reveals its response mechanism to the biocontrol actinomycete Saccharothrix yanglingensis Hhs.015 2018-02 CRA000693 PRJCA000699
1 Theranostics Microvesicles as Potential Biomarkers for the Identification of Senescence in Human Mesenchymal Stem Cells 2017-06 CRA000160 PRJCA000325
1 Frontiers in Genetics Whole Exome Sequencing Identified a Novel Heterozygous Mutation in HMBS Gene in a Chinese Patient With Acute Intermittent Porphyria With Rare Type of Mild Anemia 2018-04 CRA000851 PRJCA000809
1 Journal of Genetics and Genomics Genome wide abnormal DNA methylome of human blastocyst in assisted reproductive technology 2017-10 CRA000114 PRJCA000248
1 Frontiers in cellular and infection microbiology Detection of Pulmonary Infectious Pathogens From Lung Biopsy Tissues by Metagenomic Next-Generation Sequencing 2018-06 CRA000937 PRJCA000880
1 cell stem cell Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming 2018-06 CRA000932 PRJCA000878
1 Nucleic Acids Research Genome wide analyses uncover allele-specific RNA editing in human and mouse 2018-07 CRA000575 PRJCA000627
1 The Plant Cell A Core Regulatory Pathway Controlling Rice Tiller Angle Mediated by the LAZY1-dependent Asymmetric Distribution of Auxin 2018-06 CRA000335 PRJCA000470

Agency GSAs Experiments Runs
Ministry of Science and Technology of the People's Republic of China (MOST) 3 62 76
National Natural Science Foundation of China (NSFC) 15 774 1018
Chinese Academy of Sciences (CAS) 22 518 913