ChickenSD / RefSNPs / ggaS11663138
Detail information of ggaS11663138
1.General Information
Reference SNP ID: | ggaS11663138 |
Chromosome: | chr3 |
Position: | 122 |
RefSNP Alleles | G/A |
NCBI ss link |
2.Gene information
Var ID | Gene ID | Transcript ID | Gene Symbol | Variant Effect | Biotype | cDNA Position | Allele Change | Protein ID | Protein Position | Residue Change |
---|---|---|---|---|---|---|---|---|---|---|
ggaS11663138 | - | - | intergenic_variant | - | 0 | - => - | - | 0 | - => - |
3.Individual Genotype
Individual | Genotype |
---|---|
100S | G |
101S_L1_I028 | G |
102S_L3_I037 | G |
103S | G |
104S_L7_I029 | G |
105S_L3_I039 | G |
106S_L6_I030 | G |
107S_L2_I031 | G |
108S_L6_I032 | G |
109S_L5_I033 | G |
110S_L4_I034 | G |
111S_L3_I047 | G |
112S_L3_I035 | G |
113S_L1_I036 | G |
114S_L3_I037 | G |
116S_L6_I038 | G |
117S_L2_I039 | G |
118S_L4_I040 | G |
119S_L3_I041 | G |
11S | G |
121S_L3_I042 | G |
122S_L4_I043 | G |
123S_L4_I044 | G |
124S_L2_I048 | G |
125S_L3_I050 | G |
126S_L3_I051 | G |
127S_L2_I045 | G |
128S_L1_I042 | G |
129S_L3_I043 | G |
12S_L4_I011 | G |
130S_L4_I044 | G |
131S_L2_I045 | G |
132S_L2_I046 | G |
133S_L8_I046 | G |
134S_L2_I047 | G |
135S_L3_I048 | G |
13S_L7_I012 | G |
14S_L2_I021 | G |
16S_L5_I023 | G |
17S_L3_I024 | G |
18833 | G |
18S_L7_I025 | G |
19297 | G |
19912 | G |
19S_L4_I026 | G |
1S | G |
20736 | G |
22S_L6_I029 | G |
23S_L2_I030 | G |
24S_L4_I031 | G |
25S_L3_I032 | G |
27S_L4_I034 | G |
29S_L3_I036 | G |
2S | G |
30S_L2_I037 | G |
32S_L1_I039 | G |
35S_L5_I041 | G |
36S_L5_I042 | G |
37S_L2_I043 | G |
38S_L6_I044 | G |
39S_L6_I053 | G |
40S_L2_I054 | G |
42S_L3_I055 | G |
43S | G |
44S_L4_I001 | G |
45S_L2_I002 | G |
46S_L4_I003 | G |
47S_L3_I046 | G |
48S_L1_I004 | G |
49S_L1_I005 | G |
4S_L4_I004 | G |
50S_L1_I047 | G |
53S_L2_I006 | G |
54S_L2_I007 | G |
55S_L1_I008 | G |
56S_L1_I010 | G |
58S_L4_I051 | G |
59S_L5_I052 | G |
62S_L8_I055 | G |
63S_L5_I056 | G |
64S_L4_I001 | G |
66S_L2_I003 | G |
67S_L1_I011 | G |
68S_L3_I012 | G |
69S | G |
6S | G |
70S | G |
71S_L3_I023 | G |
72S_L1_I024 | G |
74S_L4_I026 | G |
75S_L3_I027 | G |
76S_L1_I028 | G |
77S_L4_I029 | G |
78S_L4_I030 | G |
79S_L2_I031 | G |
7S_L4_I007 | G |
80S_L3_I004 | G |
81S_L1_I005 | G |
82S | G |
83S_L3_I033 | G |
84S_L5_I006 | G |
85S_L5_I007 | G |
86S_L5_I008 | G |
90S_L4_I021 | G |
91S_L4_I022 | G |
92S_L5_I023 | G |
93S_L7_I024 | G |
95S_L8_I025 | G |
96S_L4_I026 | G |
97S_L8_I027 | G |
98S_L3_I034 | G |
9S | G |
A1 | G |
A10 | G |
A12 | G |
A14 | G |
A3 | G |
A8 | G |
BKL2 | G |
BLB1_L2_I007 | G |
BLB2_L2_I008 | G |
BLO1 | G |
BLO15 | G |
BLO2 | G |
BLO3_L4_I022 | G |
BOJA2 | G |
BYW5_L2_I010 | G |
GVF | G |
India1 | G |
India13 | G |
India15 | G |
India17 | G |
India19 | G |
India21 | A |
India23 | G |
India25 | G |
India27 | G |
India29 | G |
India31 | G |
India33 | G |
India35 | G |
India37 | G |
India39 | G |
India41 | G |
India45 | G |
India47 | G |
India5 | G |
India55 | G |
India57 | G |
India59 | G |
India61 | G |
India7 | G |
India9 | G |
L2 | G |
N1 | G |
N13 | G |
N18 | G |
N3 | G |
N5 | G |
N7 | G |
S-f1_L4_I106 | G |
S-f2_I107 | G |
S-f3_I108 | G |
S-f4_L4_I109 | G |
S-m2_I102 | G |
S-m3_I103 | G |
S-m4_L2_I104 | G |
S6 | G |
SAMN02486156 | G |
SAMN02486157 | G |
SAMN02486158 | G |
SAMN02486159 | G |
SAMN02486160 | G |
SAMN02486161 | G |
SAMN02486162 | G |
SAMN02486163 | G |
SAMN02486164 | G |
SAMN02486165 | G |
SAMN02486166 | G |
SAMN02486167 | G |
Silkia | G |
T2 | G |
T3 | G |
TD1 | G |
TD12 | G |
TD15 | G |
TD22 | G |
TD27 | G |
TD6 | G |
TD9 | G |
Tibet | G |
Xcelris_10 | G |
Xcelris_105 | G |
Xcelris_10A | G |
Xcelris_10B | G |
Xcelris_112 | G |
Xcelris_114 | G |
Xcelris_11B | G |
Xcelris_120 | G |
Xcelris_127 | G |
Xcelris_128 | G |
Xcelris_129 | G |
Xcelris_12A | G |
Xcelris_13 | G |
Xcelris_137 | G |
Xcelris_13B | G |
Xcelris_14 | G |
Xcelris_141 | G |
Xcelris_142 | G |
Xcelris_143 | G |
Xcelris_144 | G |
Xcelris_14A | G |
Xcelris_174 | G |
Xcelris_175 | G |
Xcelris_176 | G |
Xcelris_1A | G |
Xcelris_219 | G |
Xcelris_222 | G |
Xcelris_224 | G |
Xcelris_226 | G |
Xcelris_227 | G |
Xcelris_276 | G |
Xcelris_278 | G |
Xcelris_279 | G |
Xcelris_280 | G |
Xcelris_282 | G |
Xcelris_331 | G |
Xcelris_332 | G |
Xcelris_335 | G |
Xcelris_336 | G |
Xcelris_339 | G |
Xcelris_36 | G |
Xcelris_377 | G |
Xcelris_378 | G |
Xcelris_379 | G |
Xcelris_380 | G |
Xcelris_382 | G |
Xcelris_383 | G |
Xcelris_384 | G |
Xcelris_385 | G |
Xcelris_392 | G |
Xcelris_394 | G |
Xcelris_44 | G |
Xcelris_5A | G |
Xcelris_5B | R |
Xcelris_67 | G |
Xcelris_6A | G |
Xcelris_6B | G |
Xcelris_77 | G |
Xcelris_84 | G |
Xcelris_8A | G |
Xcelris_90 | G |
Xcelris_98 | G |
Xcelris_MT-134 | G |
Xcelris_MT-18 | G |
Xcelris_MT-38 | G |
Xcelris_MT-46 | G |
Xcelris_MT-48 | G |
Xcelris_MT-6 | G |
Xcelris_MT-85 | G |
Xcelris_MT-9 | G |
Xcelris_MT-99 | G |
Y1-f1_L5_I119 | G |
Y1-f2_L6_I121 | G |
Y1-m2_L4_I122 | G |
Y1-m3_L7_I123 | G |
Y1-m5_L7_I102 | G |
YPt565 | G |
YPt601 | G |
YPt604 | G |
YPt609 | G |
YPt610 | G |
YPt637 | G |
YPt641 | G |
YPt648 | G |
You1 | G |
You3_L7_I1000005 | G |
Ypt567 | G |
Ypt569 | G |
Ypt570 | G |
Ypt572 | G |
Ypt573 | G |
Ypt575 | G |
Ypt577 | G |
Ypt578 | G |
Ypt579 | G |
Ypt580 | G |
Ypt581 | G |
Ypt582 | G |
Ypt583 | G |
Ypt584 | G |
Ypt585 | G |
Ypt586 | G |
Ypt587 | G |
Ypt588 | G |
Ypt589 | G |
Ypt590 | G |
Ypt591 | G |
Ypt592 | G |
Ypt593 | G |
Ypt594 | G |
Ypt597 | G |
Ypt598 | G |
Ypt599 | G |
Ypt603 | G |
Ypt606 | G |
Ypt608 | G |
Ypt624 | G |
Ypt638 | G |
Ypt640 | G |
Ypt642 | G |
Ypt643 | G |
Ypt645 | G |
Yt516 | G |
Yt517 | G |
Yt518 | G |
Yt519 | G |
Yt520 | G |
Yt521 | G |
Yt522 | G |
Yt523 | G |
Yt524 | G |
Yt525 | G |
Yt526 | G |
Yt527 | G |
Yt528 | G |
Yt529 | G |
Yt530 | G |
Yt531 | G |
Yt536 | G |
Yt538 | G |
Yt539 | G |
Yt540 | G |
ZJ1 | G |
ZJ2 | G |
ZJ3 | G |
ZJ4 | G |
india3 | G |
india49 | G |
production | G |
yp914ypt | G |
ypt170_L2_I012 | G |
ypt171_L2_I021 | G |
ypt175_L2_I023 | G |
ypt2051_L3_I003 | G |
ypt2053_L6_I004 | G |
ypt2063_L6_I005 | G |
ypt2069_L6_I006 | G |
ypt2071_L1_I038 | G |
ypt2082 | G |
ypt2086 | G |
ypt2087 | G |
ypt2091 | G |
ypt2093 | G |
ypt2094 | G |
ypt2095 | G |
ypt2098 | G |
ypt2100 | G |
ypt2101 | G |
ypt2102 | G |
ypt2103 | G |
ypt2105 | G |
ypt2106 | G |
ypt2107 | G |
ypt2108 | G |
ypt2109 | G |
ypt2112 | G |
ypt2114 | G |
ypt2115 | G |
ypt2118 | G |
ypt2119 | G |
ypt2120 | G |
ypt2124_L4_I052 | G |
ypt2126_L3_I053 | G |
ypt2127_L1_I036 | G |
ypt2145_L6_I056 | G |
ypt2146_L6_I001 | G |
ypt2163 | G |
ypt2164 | G |
ypt2165 | G |
ypt2166 | G |
ypt2167 | G |
ypt2168 | G |
ypt2169 | G |
ypt2170 | G |
ypt2171 | G |
ypt2173 | G |
ypt2174 | G |
ypt2175 | G |
ypt2176 | G |
ypt2177 | G |
ypt2178 | G |
ypt2184 | G |
ypt2185 | G |
ypt2186 | G |
ypt2187 | G |
ypt2190 | G |
ypt2191 | G |
ypt2200 | G |
ypt2205 | G |
ypt2209 | G |
ypt2214 | G |
ypt2215 | G |
ypt2216 | G |
ypt2218 | G |
ypt2219 | G |
ypt221_L3_I042 | G |
ypt2220 | G |
ypt2221 | G |
ypt2222 | G |
ypt222_L3_I027 | G |
ypt2437 | G |
ypt2438 | G |
ypt2439 | G |
ypt2440 | G |
ypt2441 | G |
ypt2443 | G |
ypt2444 | G |
ypt2445 | G |
ypt2446 | G |
ypt2447 | G |
ypt2448 | G |
ypt2449 | G |
ypt2454 | G |
ypt2459 | G |
ypt2468 | G |
ypt2497 | G |
ypt2498 | G |
ypt2499 | G |
ypt2500 | G |
ypt2503 | G |
ypt2504 | G |
ypt2507 | G |
ypt2512 | G |
ypt2516 | G |
ypt2521 | G |
ypt2523 | G |
ypt2534 | G |
ypt2541 | G |
ypt2543 | G |
ypt2544 | G |
ypt2545 | G |
ypt2546 | G |
ypt2547 | G |
ypt2562 | G |
ypt2563 | G |
ypt2569 | G |
ypt2570 | G |
ypt2571 | G |
ypt2572 | G |
ypt2573 | G |
ypt2574 | G |
ypt2575 | G |
ypt2598 | G |
ypt259_L2_I029 | G |
ypt2601 | G |
ypt2606 | G |
ypt2615 | G |
ypt2623 | G |
ypt2624 | G |
ypt2625 | G |
ypt2628 | G |
ypt262_L3_I030 | G |
ypt2630 | G |
ypt2636 | G |
ypt2638 | G |
ypt263_L3_I031 | G |
ypt2641 | G |
ypt2644 | G |
ypt2646 | G |
ypt264_L3_I032 | G |
ypt2650 | G |
ypt2653 | G |
ypt2656 | G |
ypt2657 | G |
ypt2658 | G |
ypt2661 | G |
ypt2664 | G |
ypt2670 | G |
ypt2671 | G |
ypt2672 | G |
ypt2673 | G |
ypt2706 | G |
ypt2722 | G |
ypt2739 | G |
ypt2740 | G |
ypt2745 | G |
ypt2760 | G |
ypt2761 | G |
ypt2765 | G |
ypt2766 | G |
ypt2775 | G |
ypt2780 | G |
ypt2781 | G |
ypt2782 | G |
ypt2784 | G |
ypt2785 | G |
ypt2786 | G |
ypt2787 | G |
ypt2788 | G |
ypt2789 | G |
ypt2790 | G |
ypt2791 | G |
ypt2792 | G |
ypt2799 | G |
ypt2800 | G |
ypt2808 | G |
ypt2810 | G |
ypt2812 | G |
ypt2816 | G |
ypt2817 | G |
ypt2819 | G |
ypt2821 | G |
ypt2822 | G |
ypt2823 | G |
ypt2824 | G |
ypt2825 | G |
ypt2827 | G |
ypt2828 | G |
ypt2831 | G |
ypt2832 | G |
ypt2842 | G |
ypt2843 | G |
ypt2849 | G |
ypt2859 | G |
ypt2860 | G |
ypt2861 | G |
ypt2862 | G |
ypt2870 | G |
ypt2871 | G |
ypt2887 | G |
ypt2888 | G |
ypt2890_L3_I040 | G |
ypt2891_L3_I041 | G |
ypt2892 | G |
ypt2894 | G |
ypt2895_L3_I026 | G |
ypt2902 | G |
ypt2909 | G |
ypt2910 | A |
ypt2911 | G |
ypt2912 | G |
ypt2918 | G |
ypt2929 | G |
ypt2930 | G |
ypt3001 | G |
ypt3002 | G |
ypt3003 | G |
ypt3004 | G |
ypt3005 | G |
ypt3007 | G |
ypt3008 | G |
ypt3009 | G |
ypt3011 | G |
ypt3012 | G |
ypt3016 | G |
ypt3017 | G |
ypt3028 | G |
ypt3038 | G |
ypt3040 | G |
ypt3041 | G |
ypt3043 | G |
ypt3044 | G |
ypt3045 | G |
ypt3046 | G |
ypt3047 | G |
ypt3051 | G |
ypt3052 | G |
ypt3061 | G |
ypt3069 | G |
ypt3133 | G |
ypt3134 | G |
ypt3135 | G |
ypt3137 | G |
ypt3138 | G |
ypt3139 | G |
ypt3140 | G |
ypt3141 | G |
ypt3142 | G |
ypt3143 | G |
ypt3144_L3_I039 | G |
ypt3145 | G |
ypt3146 | G |
ypt3149_L2_I034 | G |
ypt3150_L8_I023 | G |
ypt3159_L6_I035 | G |
ypt3160_L8_I024 | G |
ypt3162_L6_I036 | G |
ypt3179_L8_I025 | G |
ypt3181_L7_I038 | G |
ypt3182_L1_I039 | G |
ypt3189_L1_I040 | G |
ypt3190_L8_I026 | G |
ypt3191_L2_I041 | G |
ypt3195_L1_I042 | G |
ypt3196_L2_I043 | G |
ypt3197_L1_I044 | G |
ypt3198_L2_I045 | G |
ypt3206_L1_I048 | G |
ypt3207_L6_I050 | G |
ypt3210_L6_I051 | G |
ypt3211_L6_I052 | G |
ypt3213_L8_I029 | G |
ypt3219_L1_I030 | G |
ypt3221_L1_I032 | G |
ypt3222_L1_I033 | G |
ypt3224_L8_I043 | G |
ypt3225_L2_I053 | G |
ypt3226_L3_I044 | G |
ypt3228-7_L1_I034 | G |
ypt3229_L8_I045 | G |
ypt3238_L3_I046 | G |
ypt3239_L1_I035 | G |
ypt3240_L6_I054 | G |
ypt3241_L6_I055 | G |
ypt3243_L8_I047 | G |
ypt3245 | G |
ypt3246_L6_I050 | G |
ypt3257_L1_I056 | G |
ypt3258_L3_I001 | G |
ypt3259_L6_I002 | G |
ypt3260_L6_I003 | G |
ypt3262_L7_I005 | G |
ypt3270_L1_I007 | G |
ypt3271_L7_I008 | G |
ypt3272_L7_I010 | G |
ypt3274A_L7_I011 | G |
ypt3276_L7_I021 | G |
ypt3277_L6_I027 | G |
ypt3278_L3_I028 | G |
ypt3289_L8_I021 | G |
ypt4001 | G |
ypt53_L2_I032 | G |
ypt55_L1_I033 | G |
ypt891 | G |
ypt896_L2_I047 | G |
ypt897_L3_I048 | G |
ypt900_L2_I050 | G |
ypt901_L1_I052 | G |
ypt902_L1_I053 | G |
ypt903_L2_I054 | G |
ypt904_L4_I055 | G |
ypt906_L3_I001 | G |
ypt907_L6_I002 | G |
ypt908_L1_I003 | G |
ypt909_L5_I004 | G |
ypt910_L3_I005 | G |
ypt911_L6_I006 | G |
ypt912 | G |
ypt917 | G |
ypt918_L3_I007 | R |
ypt919_L4_I008 | G |
ypt920_L5_I010 | G |
ypt921_L8_I011 | G |
ypt923_L2_I051 | G |
ypt925_L2_I022 | G |
ypt926_L2_I023 | G |
ypt929 | G |
ypt931 | G |
ypt932 | G |
ypt933 | G |
ypt934x | G |
ypt935 | G |
ypt936 | G |
ypt937 | G |
ypt938x | G |
ypt939_L5_I025 | G |
ypt940_L4_I026 | G |
ypt941_L5_I027 | G |
ypt942_L7_I028 | G |
ypt945_L4_I031 | G |
ypt946_L4_I032 | G |
ypt948_L2_I034 | G |
ypt949_L3_I035 | G |
ypt950_L5_I036 | G |
ypt951 | G |
ypt952 | G |
ypt953 | G |
ypt954 | G |
ypt955 | G |
ypt956x | G |
ypt957 | G |
ypt958 | G |
ypt960 | G |
ypt962 | G |
ypt963 | G |
ypt965 | G |
ypt966 | G |
ypt972x | G |
ypt974 | G |
ypt975_L8_I039 | G |
ypt976_L7_I040 | G |
ypt977_L2_I041 | G |
ypt978_L2_I052 | G |
ypt979_L6_I042 | G |
ypt980_L3_I043 | G |
ypt981_L2_I044 | G |
ypt982_L4_I045 | G |
ypt984 | G |
yptwj | G |
147209 | G |
147830 | G |
GLF_denovo | G |
Gallus_Sonneriatii_d | G |
Ypt4000 | G |
Ypt4879 | G |
Ypt4880 | G |
4. Population Genetics Analyses
Population | Sample # | Allele:Frequency | Genotype:Frequency |
---|---|---|---|
Afghan | 11 | G:1.00; A:0.00; | GG:1.00; |
Beijing | 11 | G:1.00; A:0.00; | GG:1.00; |
Bengal | 15 | G:1.00; A:0.00; | GG:1.00; |
Cornish_UK | 1 | G:1.00; A:0.00; | GG:1.00; |
Europe_egg | 13 | G:1.00; A:0.00; | GG:1.00; |
Europe_meat | 4 | G:1.00; A:0.00; | GG:1.00; |
Gallus_lafayetii | 4 | G:0; A:0; | NN:; |
Gallus_sonnerattii | 3 | G:0.00; A:1.00; | AA:1.00; |
G.g.bankiva | 4 | G:1.00; A:0.00; | GG:1.00; |
G.g.gallus | 6 | G:1.00; A:0.00; | GG:1.00; |
G.g.jabouillei | 27 | G:1.00; A:0.00; | GG:1.00; |
G.g.murghi | 68 | G:1.00; A:0.00; | GG:1.00; |
G.g.spadiceus | 36 | G:1.00; A:0.00; | GG:1.00; |
G.g.spadiceus_Thai | 9 | G:1.00; A:0.00; | GG:1.00; |
Guangxi | 6 | G:1.00; A:0.00; | GG:1.00; |
Guangzhou | 6 | G:1.00; A:0.00; | GG:1.00; |
G.varius | 12 | G:1.00; A:0.00; | GG:1.00; |
Hainan | 1 | G:1.00; A:0.00; | GG:1.00; |
Henan | 8 | G:1.00; A:0.00; | GG:1.00; |
India | 52 | G:0.96; A:0.04; | GG:0.95; AA:0.02; AG:0.02; |
Indonesia | 36 | G:1.00; A:0.00; | GG:1.00; |
Iran | 182 | G:1.00; A:0.00; | GG:1.00; |
Jiangsu | 10 | G:1.00; A:0.00; | GG:1.00; |
Jiangxi | 30 | G:1.00; A:0.00; | GG:1.00; |
Liaoning | 8 | G:1.00; A:0.00; | GG:1.00; |
Pakistan | 37 | G:1.00; A:0.00; | GG:1.00; |
Rhode_USA | 1 | G:1.00; A:0.00; | GG:1.00; |
Shandong | 18 | G:1.00; A:0.00; | GG:1.00; |
Shanxi | 8 | G:1.00; A:0.00; | GG:1.00; |
Srilanka | 7 | G:1.00; A:0.00; | GG:1.00; |
Taiwan | 1 | G:1.00; A:0.00; | GG:1.00; |
Thailand | 6 | G:1.00; A:0.00; | GG:1.00; |
Tibet | 113 | G:1.00; A:0.00; | GG:1.00; |
Vietnan | 7 | G:1.00; A:0.00; | GG:1.00; |
WhitePlymouth_USA | 1 | G:1.00; A:0.00; | GG:1.00; |
Xinjiang | 30 | G:1.00; A:0.00; | GG:1.00; |
Yuanbao | 24 | G:1.00; A:0.00; | GG:1.00; |
Yunnan | 49 | G:1.00; A:0.00; | GG:1.00; |
5. Genotype-Phenotype Information
Chr | Position | RSID | Species/Population | Trait | Effect Allele | P-value | Reported Gene(s) Symbol | PMID |
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